barSeed - Barley Seed Development Database

Probe CUST_34322_PI390587928

Source Contig U35_3551

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34322_PI390587928	Hv_44K_v2	CCAGCTGGTATATATTACAGTTGGCATTCCCTCTGTTATTATGCTGAATCAAACTTTATA	1477	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_47532.1	1609	2e-24	1491 - 1550	100	60 / 60	plus	ABC07684 ABC21477
JLOC1	JLOC1_30636.1	1940	8e-25	136 - 195	100	60 / 60	minus
Harvest21	ABC07684	1612	3e-25	1478 - 1537	100	60 / 60	plus	ABC07684
Harvest35	U35_3551	1612	3e-25	1478 - 1537	100	60 / 60	plus

Contig Sequence (1612 bp)

>U35_3551 1612 Hv_44K_v2
CCCAGTAGAGCTGATCCTTGGGATTTAAGCTAGGACACAATGCCTGGGACGATGGTATCC
CGCGCTCTCCTGCTCGTCGGCGTCGTCCTGACGGCGCAGCTGTGCGCGTGCACGGCGTAC
GTCGGCAGCGGCGGCGATGGGTTTAGCGTGGAGTTCATCCACCGTGACTCGGCCAGGTCG
CCGTTCCACGACCCTTCGCTCACCGCGCCCGCCCGCGTGCTGGAGGCCGCTCGGCGCTCC
ACGGTCCGCGCCGCGGCGCTCTCGCGCTCCTACGTCCGCGTCGACGCGCCATCGGCTGAC
GGCTTCGTGTCCGAGCTCACGTCCACGCCGTTCGAGTACCTGATGGCTGTGAACATAGGC
ACGCCGCCCACCAGGATGGTCGCCATCGCCGACACCGGCAGCGACCTCATCTGGCTCAAC
TGCAGCTACGGAGGCGACGGCCCCGGTCTGGCGGCCGCCCGTGACGCGGACGCGCAGCCG
CCGGGCGTCCAGTTCGACCCCTCCAAATCGACGACGTTCCGCCTCGTGGACTGCGACTCC
GTCGCGTGCAGCGAGCTGCCCGAAGCATCCTGCGGCGCCGACTCCAAGTGCAGGTACTCA
TACTCCTACGGCGACGGCTCCCACACGAGCGGCGTCCTCTCCACAGAGACCTTCACCTTC
GCCGACGCCCCGGGCGCCCGCGGCGATGGGACGACGACGCGCGTGGCCAACGTCAACTTC
GGCTGTTCCACGACCTTCGTCGGCTCGTCCGTCGGGGACGGCCTCGTCGGCCTCGGCGGC
GGCGACCTCTCCCTCGTCAGTCAGCTCGGCGCAGACACCTCGCTGGGCCGGAGGTTCTCC
TACTGCCTCGTGCCCTACTCCGTCAAGGCCTCCTCCGCGCTCAACTTCGGCCCCCGCGCC
GCCGTCACCGACCCGGGCGCGGTGACGACGCCGCTGATCCCATCCCAAGTGAAGGCATAC
TACATCGTCGAGCTCCGGTCCGTCAAGGTCGGGAACAAGACCTTCGAGGCGCCGGACCGG
TCCCCCCTCATCGTCGACTCCGGCACGACGCTCACATTCCTACCGGAGGCGCTTGTAGAC
CCGCTGGTGAAGGAGCTGACCGGGCGGATCAAGCTCCCGCCCGCGCAGTCGCCAGAAAGG
CTCCTGCCGCTCTGCTTCGACGTGAGCGGGGTGCGGGAGGGGCAGGTTGCGGCCATGATC
CCTGACGTGACGGTGGGGCTGGGCGGCGGCGCTGCGGTCACGCTGAAGGCGGAGAACACG
TTCGTGGAGGTGCAGGAGGGGACGCTGTGCTTGGCGGTGTCGGCGATGTCGGAGCAGTTT
CCGGCGTCGATCATCGGGAACATCGCCCAGCAGAACATGCACGTTGGGTACGACCTCGAC
AAGGGCACCGTGACCTTCGCCCCAGCAGCCTGCGCGAGTTCCTACCCCGCCCCCTCACCC
TCCGCCTCTGTGTAGCTACATATCGCATCACCATTGCCCAGCTGGTATATATTACAGTTG
GCATTCCCTCTGTTATTATGCTGAATCAAACTTTATAAAGTTTGATCAACGATATGAAAA
TATATATTAATAATAAATCTAATGATATTGATGATCAAAAAAAAAAAAAAAA

Homology of Contig U35_3551 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g08330.1	455	2e-145	protein\|aspartic proteinase nepenthesin-1 precursor, putative, expressed
Brachypodium v1_2	Bradi2g04920.1	539	1e-130
Arabidopsis v10	AT1G64830.1	431	2e-60	Eukaryotic aspartyl protease family protein \| chr1:24091271-24092566 REVERSE LENGTH=431