barSeed - Barley Seed Development Database

Probe CUST_34321_PI390587928

Source Contig U35_3552

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34321_PI390587928	Hv_44K_v2	AATGATTGCATCGATTCGTTTCGGCTTCATGCCATGCCAATACATTGTCCTTTTCACAAA	753	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.417	1.433	1.073	0.833	0.458	0.458
Raw	3672.553	5501.340	3809.077	4492.867	887.991	965.531

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5314.1	3180	2e-23	3016 - 3073	100	58 / 58	plus	ABC09751
JLOC1	JLOC1_3409.1	3407	1e-23	3245 - 3302	100	58 / 58	plus
Harvest21	ABC09751	852	4e-24	754 - 811	100	58 / 58	plus	ABC09751
Harvest35	U35_3552	860	3e-25	754 - 813	100	60 / 60	plus

Contig Sequence (860 bp)

>U35_3552 860 Hv_44K_v2
GCTTATGAAAGCAATTGGATGGCAAGGTGGAAGTATACTGGCATTAGAGACACTAAAGCG
TGTTGTTGGCGCTGGTAATCGAGCTAGAGACGCGCTTGTTGCACAGGGGCTGAAGGTTGG
TCTTGTTGATGTGCTCCTTGGCATTCTCGACTGGCGAGCTGGTGGAAGGCAGGGACTCTG
TAACCAAATGAAGTGGAATGAATCAGAGGCTTCAATTGGGCGTGTATTAGCAGTGGAGGT
ACTTCATGCTTTTGCAACGGAAGGCGCTCACTGTGCTAAAGTTCGAGAAATTCTTAATTC
TTCTGATGTATGGAGCGCCTACAAAGACCAGAAACATGACCTGTTCCTTCCATCCAATGC
ACAAACTTCCGCTGCCGGAGTTGCAGGGCTTATCGAGAGCTCGTCTTCAAGGCTCACCTA
TGCCCTCACGGCGGCGCCCTCGCCTCAACCCGCCCTGGTCCGTCTACCATCATCATCTCC
TCCTCCACCGACTGGTCCTGTAAATCCTGCCAGCGGGCGGCGGCATTCGTAGCGCACAAG
TTGAAAAACACGCCGATCTCAGCTTCTTGAGGATGTCGTGAACATTTTGGAGTTGGTGGT
GCTCTTCAGAGTGACTGCAGGTGGCTTGCAAGTACATAGCATGTACAGTTTTTTTCCGTT
ACACAGAGGTCGGGTGTCGTGTGCGTTTCTTGTACATGTAAAAGCACTCCTTTTTGTTAG
TTTCACCTGTCCATAGAGAATATCCGGGATGGAAATGATTGCATCGATTCGTTTCGGCTT
CATGCCATGCCAATACATTGTCCTTTTCACAAAAAAAAAAAAAAAAAATGAGTTGCATGG
TATTTCTTTCTTAAAAAAAA

Homology of Contig U35_3552 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g42439.1	2633	8e-81	protein\|heat shock protein DnaJ, putative, expressed
Brachypodium v1_2	Bradi3g34450.1	2639	4e-82
Arabidopsis v10	AT2G26890.1	2554	2e-63	\| Symbols: GRV2, KAM2 \| DNAJ heat shock N-terminal domain-containing protein \| chr2:11462327-11473841 REVERSE LENGTH=2554