barSeed - Barley Seed Development Database

Probe CUST_34320_PI390587928

Source Contig U35_3553

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34320_PI390587928	Hv_44K_v2	CAAGAACTTTATGTTGGGTACTGTCAATGCTCTGCTCAAATCATTCAGCTTAATGAGAAA	1164	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357385	1234	3e-21	1157 - 1216	97	58 / 60	plus	ABC08944 ABC09342 ABC09343
MLOC	MLOC_74840.1	2151	3e-21	543 - 602	97	58 / 60	plus	ABC08944 ABC15251
JLOC1	JLOC1_49894.1	2167	2e-21	554 - 613	97	58 / 60	plus
Harvest21	ABC08944	1238	3e-25	1165 - 1224	100	60 / 60	plus	ABC08944
Harvest35	U35_3553	1238	3e-25	1165 - 1224	100	60 / 60	plus

Contig Sequence (1238 bp)

>U35_3553 1238 Hv_44K_v2
GCCCCACTCGCCTCCAAACCATAGAGAAGAGAAGAGAACCTCACCTCCCCTTCCTCCTCC
TGCGCTCCACCACCCCACGTCCCCACCCCACCCTCTCCAATGTCGCCGCCCCTCGAGCCG
CACGACTACATCGGCCTCTCAGCCGCCGCGCCGGCCCCAACCTCATCCTCCTCCTCCTCC
TCGACGGAGGGGCCCCGCCTCACGCTCCGTCTCGGCCTCCCGGGATCGGAGTCCCCCGAC
CGCGACCGCGACCGCGACGGCTCCGCGGAGGACGTCGCCCCGGCGCTCACCCTCGGCCCC
GTCCCCATCCCCCACAAGGCCGCCTCCAAGCGCGCGTTCCCCGACGCCTCCCCCCGCCGC
GGGTGCTCCGCTGCCGCCAAGGCCGAGGAGAAGCCGCCCTCCGCGGCTCCGCCGGCCGCC
AAGGCGCAGGTTGTGGGATGGCCGCCCGTGCGCAACTACCGGAAGAACACGCTGGCGGCG
AGCGCCTCCAAGACCAAGGGGGGAGACGACGCTGCGCCTCACTATGTCAAGGTGAGCATG
GATGGCGCCCCCTACCTCAGGAAGGTCGACCTCAAGACGTATTCCAGCTACGAGGATCTC
TCCATGGCACTTCAGAAGATGTTCAGCTGCTTCATCACTGGTCAAAGCGCGCTGCGCAAA
CCATCAACCAAGGACAGGCTTACTAGTCGTTCCAATGCTGATTCCCTCCAAGATCAAGAG
TACGTCCTCACATACGAAGATAAGGACGCTGACTGGATGCTTGTCGGTGATCTTCCATGG
GATTTGTTTACCACAATATGCAGGAAACTGAAAATCATGAGAGGATCTGATGCAGCTGGA
ATAGCTCCAAGATCCCTAGAGCAGACAGGTCAGAACAAATAAGATTGACCTTGTTCCAGA
GTAAAGAGAATGAACCGAGCTAAGTTGCGATGATGTTGATGGCCGAAATTATTCATGCCA
AGTACCTCAAATATCCCAAATGTTAGTGTAGTTACACGTGTTTCTTAGACCTGTGTGTCA
AATGTCTGTAATGTGATCTGTTGAGATATCACAATTATGAGGAAGCTCTGCACTTCCTGA
ATGCGAGCTCTCCACCAGTATTATTTCGTATGTATATTCAGGTGTTGCACTAAGTGTTAT
GCTCTCTTGCAATTATCCAAATGCCAAGAACTTTATGTTGGGTACTGTCAATGCTCTGCT
CAAATCATTCAGCTTAATGAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_3553 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g48444.1	272	2e-95	protein\|OsIAA5 - Auxin-responsive Aux/IAA gene family member, expressed
Brachypodium v1_2	Bradi2g46420.1	272	2e-105
Arabidopsis v10	AT2G22670.4	338	2e-54	\| Symbols: IAA8 \| indoleacetic acid-induced protein 8 \| chr2:9636877-9638459 FORWARD LENGTH=338