- Probe CUST_34313_PI390587928
- Source Contig U35_3560
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34313_PI390587928 | Hv_44K_v2 | ATCACAACAAAGACAAATGCAAGGCAAACGGCTCTACATGTTGCGGAGAATGATGACGTG | 547 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK365284 | 1115 | 7e-23 | 560 - 619 | 98 | 59 / 60 | plus | ABC10124 |
| MLOC | MLOC_5942.2 | 4378 | 7e-23 | 3728 - 3787 | 98 | 59 / 60 | minus | ABC04491 ABC05120 ABC05121 ABC10124 ABC42371 |
| MLOC | MLOC_5941.2 | 6166 | 7e-23 | 5225 - 5284 | 98 | 59 / 60 | minus | ABC04491 ABC05120 ABC05121 ABC10124 ABC42371 |
| JLOC1 | JLOC1_3859.2 | 5260 | 4e-23 | 608 - 667 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC10124 | 1104 | 1e-23 | 550 - 609 | 98 | 59 / 60 | plus | ABC10124 |
| Harvest21 | ABC10123 | 618 | 1e-23 | 547 - 606 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_3560 | 619 | 3e-25 | 548 - 607 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_3561 | 1131 | 1e-23 | 562 - 621 | 98 | 59 / 60 | plus |
Contig Sequence (619 bp)
>U35_3560 619 Hv_44K_v2 GACGATTTCCCCACCTTCGTCCTTCCTTCTCTCCTTCCTCTCTCTCTCTCCCCTCCCTCT CTCTCGTCCGCTCCCGCGAGCCCGTGTGAGAGAGATGGGGAGACGCCGAGCCGGCGGCGG GGGGCGCGGAGGAGGCCGAGGAGGAGAAGGACGGGGTGGAGGAGAGGAGGAGGATCTGAA GCTGCACAAGGCTGCGAGGTCGGGTGATGCGGCGGCGGTGGAGTCGCTTTGCGAGTCGGA CCCTCTCGCCCTCAACTCTAGAGACCGCCTCTCCCGCACCCCACTCCATCTGGCGGCATG GGCTGGGCATGTTGATGTTGTGAAATGCCTTTGCAAGCACAAAGCTGATGTGGGGGCTGC AGCAATGGATGACACCGCCGCAATCCATTTTGCTTCCCAGAAAGGTCATTTGGAAGTGGT GCGTGAGCTGCTGGCATCGGGGGCCTCTGTGAAAGCAAAGAACAGGAAAGGTTTCACAGC GTTGCACTTTGCTGCTCAGAACTCCCACCTGGAGCTTGTGAAGTATTTGGTGAGGAGGGG CGTGGACATCACAACAAAGACAAATGCAAGGCAAACGGCTCTACATGTTGCGGAGAATGA TGACGTGCGTGCTTTCCTG
Homology of Contig U35_3560 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os10g43040.1 | 266 | 4e-87 | protein|ankyrin repeat domain-containing protein 28, putative, expressed |
| Brachypodium v1_2 | Bradi3g21630.1 | 262 | 5e-94 | |
| Arabidopsis v10 | AT4G19150.1 | 243 | 2e-58 | Ankyrin repeat family protein | chr4:10471578-10472677 REVERSE LENGTH=243 |