barSeed - Barley Seed Development Database

Probe CUST_34312_PI390587928

Source Contig U35_3561

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34312_PI390587928	Hv_44K_v2	TCAGGTAGTTGATGTCTTGTTGATGATAATTTACTAATGACCCCCTTAAAAACAAGATGG	1050	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.432	1.516	1.005	0.881	0.405	0.419
Raw	1185.664	1946.397	1127.137	1568.817	254.789	283.444

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365284	1115	2e-24	1049 - 1108	100	60 / 60	plus	ABC10124
MLOC	MLOC_5942.2	4378	2e-24	3239 - 3298	100	60 / 60	minus	ABC04491 ABC05120 ABC05121 ABC10124 ABC42371
MLOC	MLOC_5941.2	6166	2e-24	4736 - 4795	100	60 / 60	minus	ABC04491 ABC05120 ABC05121 ABC10124 ABC42371
JLOC1	JLOC1_3859.2	5260	8e-25	1097 - 1156	100	60 / 60	plus
Harvest35	U35_3561	1131	3e-25	1051 - 1110	100	60 / 60	plus
Harvest35	U35_17507	1659	1e-24	1246 - 1304	100	59 / 59	minus

Contig Sequence (1131 bp)

>U35_3561 1131 Hv_44K_v2
GACGATTTCCCCACCTTCGTCCTTCCTTCTCTCCCTCCCTCTCTCTCTCTCCCCCTCCCT
CTCTCTCGTCCGCTCCCGCGAGCCCGTGTGAGAGAGATGGGGAGACGCCGAGCCGGCGGC
GGGGGGCGCGGAGGAGGCAGAGGTCGAGGCCGAGGAGGAGAAGGACGGGGTGGAGGAGAG
GAGGAGGATCTGAAGCTGCACAAGGCTGCGAGGTCGGGTGATGCGGCGGCGGTGGAGTCG
CTTTGCGACTCGGACCCTCTCGCCCTCAACTCTAGAGACCGCCTCTCCCGCACCCCACTC
CATCTGGCGGCATGGGCTGGGCATGTTGATGTTGTGAAATGCCTTTGCAAGCACAAAGCT
GATGCGGGGGCTGCAGCAATGGATGACACCGCCGCAATCCATTTTGCTTCCCAGAAAGGT
CATTTGGAAGTGGTGCGTGAGCTGCTGGCATCGGGGGCCTCTGTGAAAGCAAAGAACAGG
AAAGGTTTCACAGCGTTGCACTTTGCTGCTCAGAACTCCCACCTGGAGCTTGTGAAGTAT
TTGGTGAGGAGGGGCGTGGACATCACAACAAAGACAAATGCAGGGCAAACGGCTCTACAT
GTTGCGGAGAATGATGACGTGCGTGCTTTCCTGAAAGAGTGCGAGCAGTCACTGAAGAAG
GGAGTGGAGCTACCATCTGAGAAGAAGGATGATTCTGTAGCTGAGAAGGCTGATGACGGC
AAGGTCTCAGGTGAAGCTAGAAAAGATGATGCTGACGCAGAGCAGGGCGAGAAGAGGAAG
AGTGAGGAGATTGGTGCTGGGACGAGGCCGTCCGAGGTGAAGAAGGCCAAAGTTTCACTT
GCGCATCTTGAAAACGACATGGAAGAAGAAGATGAAGCAGACGAATAGAATCGAATTGCC
TCGAGAATGCCATTTGATGGTGCCAACTTGTATGCCGTGTTATCCGTTGTTCTTTTGGCA
ATTTTTGAATGTTCACAACTGTAAGAATTTTGGCTGTTCATGGGCATGCTATCTGTATCC
GAGTTGACTAGTAGTAGTACTGTGTTTTTATCAGGTAGTTGATGTCTTGTTGATGATAAT
TTACTAATGACCCCCTTAAAAACAAGATGGTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3561 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g43040.1	266	1e-109	protein\|ankyrin repeat domain-containing protein 28, putative, expressed
Brachypodium v1_2	Bradi3g21630.1	262	3e-116
Arabidopsis v10	AT4G19150.1	243	1e-61	Ankyrin repeat family protein \| chr4:10471578-10472677 REVERSE LENGTH=243