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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_34310_PI390587928Hv_44K_v2GAGAACTGAAGCATCTTGAAACTACTATGTAGCAAAGGATAGTCGAAACATGTTTGTTTT1308GeneList: brown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.5961.6131.1430.8580.3710.469
Raw 3120.3034913.7003097.2173643.783550.814760.208



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_5591.222272e-242161 - 222010060 / 60plus ABC09377
MLOCMLOC_5591.123092e-2442 - 10110060 / 60minus ABC09377
MLOCMLOC_5591.322553e-211 - 5410054 / 54minus ABC09377
JLOC1JLOC1_3607.225738e-252227 - 228610060 / 60plus
JLOC1JLOC1_3607.125458e-252199 - 225810060 / 60plus
Harvest21ABC510093943e-25290 - 34910060 / 60plus
Harvest35U35_356314133e-251309 - 136810060 / 60plus



Contig Sequence (1413 bp)

>U35_3563 1413 Hv_44K_v2
GTATTGGTGACCTTCAGCTTTTCTATAAAGCATCCAAACAAAGATTTGATGATGATGCAG
AATTTAAAGACAGGGCTCAACAAGCCGTTGTTCGGTTACAGGGAGGGGAGGAAAAGTATC
GTGCTGCTTGGAAAAAGATATGTGAAATCAGCAGGAATGAATTTGACCAGGTTTACAAGC
TCTTAGATGTACAACTTGAAGAAAAGGGGGAGAGCTTTTATAATCCTTATATTCCGCAAG
TTTTGGAGAAATTGAGTAGCCAAGGTTTGATCGAGGAAAGTGAGGGTGCTCGTGTAATAT
TCATTCAAGGTCATCAAATTCCTTTGATAGTGGTTAAAAGAGATGGTGGCTTCAACTATG
CCTCGACAGACTTGGCTGCTCTTTGGTATCGGCTTAATGTTGAGAAGGCGGAATGGATAA
TATATGTAACAGATGTTGGTCAGCAGCAGCACTTTGATATGTTTTTCAAGGCTGCCAGGA
TGGCTGGTTGGCTTCCAGATCCAAAGGAAAAGAAGTTCCCAAAAACGAGTCATGTTGGGT
TTGGCCTTGTTCTTGGAGCAGACGGCAAGCGCTTCCGAACTCGTAGTACTGAGGTTGTTC
GGTTGGGAGACCTACTGGATGAGGCTAAATCTCGAAGTAAATCAGAACTTCTCCAGCGTC
TCACTGAAAATGGTAAAATTGTTGACTGGACTGATGAGGAACTAGAGAAAACTTCGAAGG
CAGTAGGATATGGCGCTGTCAAGTACGCGGATCTGAAGAACAACCGACTGACTAATTACA
CGTTCAGCTTTGATCAGATGCTAAGTGACAAGGGAAATACCGCCGTCTATCTTCAGTATG
CTCATGCTCGTATCTGCTCCATTATTCGAAAATCCAACATGGATGTAGAAGAGCTAAAAG
TGAGTGGGAACATTTCTCTTGCTCATCCAGATGAGCGTGTCTTGGGACTGTATCTTATCC
GTTATGCAGAGATTGTTGAAGAGGCATGCACCAATCTCCTTCCCAGTGTTCTGTGTGAAT
ACCTATACAACTTATCTGAAATGTTCACGAGGTTCTACACAAACTGCCAGGTTGTTGGGT
CACCGGAGGAGCCAAGCCGGCTACTGCTTTGCGAAGCGACGGCGGTCGTCATGCGACAAT
GCTTCCAGCTGCTTGGGATCACACCAGTTTACAAGCTGTGATTGGCCAGTGTCTGACCTT
TTACATCATACATTTGTTTCCACACAAGCATGTTTCCATGGTTACAGTTTTCGTCCTTGT
AACCTAGTTGGCACCACTAACATACTCTTGAGTCGGTTGCCCCCATTTGAGAACTGAAGC
ATCTTGAAACTACTATGTAGCAAAGGATAGTCGAAACATGTTTGTTTTTTTGGCCTGTAC
TTTTTTTGCGTCATCTACTATTGTGCCGCCCTC



Homology of Contig U35_3563 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os05g07030.26070.0protein|arginyl-tRNA synthetase, putative, expressed
Brachypodium v1_2Bradi2g34680.16620.0
Arabidopsis v10AT4G26300.16420.0| Symbols: emb1027 | Arginyl-tRNA synthetase, class Ic | chr4:13308400-13313109 REVERSE LENGTH=642