barSeed - Barley Seed Development Database

Probe CUST_34306_PI390587928

Source Contig U35_3567

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34306_PI390587928	Hv_44K_v2	GTGAGTGACTAAACCTGGCTGTGTTTATCCGCGTGCAAATGATTATTGTTGAGCAAAAAA	1299	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.275	6.215	1.288	0.697	0.218	0.290
Raw	455.517	790.346	127.809	122.001	11.459	18.011

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374948	1390	3e-21	1337 - 1390	100	54 / 54	plus	ABC08003 ABC48294
JLOC1	JLOC1_2816.1	1462	5e-22	1395 - 1449	100	55 / 55	plus
Harvest21	ABC08003	1226	3e-25	1155 - 1214	100	60 / 60	plus	ABC08003
Harvest35	U35_3567	1370	3e-25	1300 - 1359	100	60 / 60	plus

Contig Sequence (1370 bp)

>U35_3567 1370 Hv_44K_v2
GGTAAGACCTTAATTCTCTGTACTACTCGACTGCTGCACATTTGAGAGAAGAGGCGGAGG
GAGGGGNAGGAAGAAGAAAGAGGAAGAGGGTTTAACTACGTGGCATGGAAATCATGGCAT
AGTTGGTTCTTTCTTCTTTCTCTTCCTCTCTCTGCCGCTTGTTCTTTCTTCTTCGCAAGC
AGCAGTCTCGATCTGGACCCTCGCAGCCAGCCGCTGCAGAGAGGGAGGACAGGCCGCCAG
CATTGCCGGCTGCGCTCTGCCACGCCCGGCGCAAGAGACAAGCGGGATGGACGGCTTGGA
AGGTTTTGAGTTCTTCCAGATCATACTTGAGAAGCCCTCCAGCAGGCTGAGGCTGCCTGA
CAAGTTTACGATGGTGCTGCTACACGGAGGCAAGCCCCAGGAAGCAGTGAAGCTGCGGGA
GGCCGGCCATGGGCGTCGCTTATGGGACGTGAAGGTGGTGTTGGATGCCGACGGCCACAT
GTACCTAGGGAGCGGTTGGGAGCAGTTCGCCCGTGCCCACGACCTGCGGCTCGGCTACTT
CCTCGAGTTCAGCTACGACGGCGATGCCGTGCTCACCGTCAAGGTGTTCGACGTGAACAT
GTGCCGCAGGCACTACAAACACGACAACGGTGCCAGCAGTGGGAGCAGCAGCGACGGTGA
CAATGAGAGCAAGAACAGCAGCGTCGGTGACAGTGGCAGCAACGACGGCGGCGCCGGTGA
CAATGGCACCAACAACAGCAGCACGGTGGAGATGGAGGTCGAGAACGGGGCGACATCGCA
GTTCAGCGCCATGCTGAGGAAATGCAACCTAGGCAAGAAGCAGGAACAGTACCTGAACGT
GCCGGTGGATTTCCAGCTCGCGCACGCGTACGCGGAGAGGAGCAAGGTGGAGCTGCGGAT
GCGCGGCAAGTCGTGGCCCGTGCACCTGAAGCACAACCCCAAGACGAGCGGCAGGCCCCG
CGCGTCGTTCAGGTACGGGTGGCACCAGTTCTGCGTCGACAACAGCCTCGGCGAGGGAGA
TACCTGCTTCTTCCGAGCGATCCGCCAAGGAAGCGGTGGCGGCGACGACCACCTGCTCAA
GGTGGAGGTGAGGAAGCCAGACGGCAGCTTCCTGGTCTGAGGCGAGGCCGGTGGCAGCCG
GCCTCCGTTGCATGCATCGGCCTGGGGTTGGCCGGCGTGACGTCGTCCGTGGCCATAGAT
CGGCCGGCGCCACTGAGTGCGTTATTATGATTTGCTTATGATAACTGTAAGACCTTAATT
CTCTGTACTACTCGACTGCTGATGCTACTAGCAGCGTACGTGAGTGACTAAACCTGGCTG
TGTTTATCCGCGTGCAAATGATTATTGTTGAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3567 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None