barSeed - Barley Seed Development Database

Probe CUST_34305_PI390587928

Source Contig U35_3568

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34305_PI390587928	Hv_44K_v2	CAGGTCGTTTTTGGCCTGCTACTGGATTATTTTGGTTGCCATTTTATCAATGTTTGATTG	1701	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.910	1.743	1.174	0.798	0.431	0.442
Raw	3236.287	4598.590	2718.153	2899.417	553.311	612.301

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11755.2	4380	2e-24	66 - 125	100	60 / 60	minus	ABC08687
MLOC	MLOC_11755.1	4233	2e-24	84 - 143	100	60 / 60	minus	ABC08687
JLOC1	JLOC1_7827.2	3890	8e-25	3772 - 3831	100	60 / 60	plus
JLOC1	JLOC1_7827.1	4056	8e-25	3938 - 3997	100	60 / 60	plus
Harvest21	ABC08687	1765	3e-25	1702 - 1761	100	60 / 60	plus	ABC08687
Harvest21	ABC08688	679	5e-23	22 - 80	98	59 / 60	minus
Harvest35	U35_3568	1782	3e-25	1702 - 1761	100	60 / 60	plus

Contig Sequence (1782 bp)

>U35_3568 1782 Hv_44K_v2
GGCTTGATCCAAACTGTAAAATAGCAGACTTTTTAAAGAAGACCTTGGATCCTCCAGTTA
CAGAGACTGTAAAAAATGCTATTACTGTGCTTCAGGATCTTGGTGCTTTAACACAAAATG
AACAATTGACAGATTTGGGTGAAAAGTTAGGTTCTCTTCCGGTCCATCCATCTACAAGCA
AGATGCTCCTGTTTGGTATACTGATGAACTGCCTTGATCCTGCATTGACATTGGCATGTG
CAGCAGGCTATAGAGATCCTTTCTTCCTTCCTATGGCTCCGGATGAGAGAAAAAAAGCTG
CTGCAGCCAAGGTTGAGCTTGCTTCATTATATGGAGGATATAGTGACCAGCTTGCTGTTG
TAGCAGCATTTGATTGTTGGACACGTGCCAAAGAGAAAGGACAAGAAGCTTTGTTTTGTT
CAAAGTATTTTGTCGCTTCAAACACCATGGATATGTTGTCTAGTATGAGGAAACAGCTTC
AGAGTGAACTAGCTCAAAGAGGATTTCTTCCTGCTGATACATCTGCCTGCAGCTTGAATG
CTAAAGTTCCAGGTATCGTTAGCGCTGTCCTTGTGGCTGGCGCTTACCCAATGGTAGGAC
GATTGCTCCCTCCTCTAAAAAATGCTAGAAGAGCAGTCGTGGAAACAGCAAGTGGTGCCA
AAGTTCGACTACATCCTCATTCTTCCAACTTTAACTTGTCATTTAATAAATCCTCCGGGA
ATCCACTAATGATATTTGATGAAATCACTCGAGGTGATGGTGGAATGTATGTAAAGAACT
GTTCAGTTGTTGGACCATATACTTTACTTCTGCATGCTACGGAAATAGCTGTTGCTCCAC
CTGATGATGTAAGTGATGAAGAGGATGAAGGTTCAAGTGGGGATGAAGCGGGGAAAGGCA
CTCTGGGACAACAAAAGAAAGAGATTATGTCTTCTCCTGATAACACTGTTTCAGTTGTTG
TTGATCGGTGGCTCCGATTTGATGCTACTGCTCTGGATGTTGCTCAGATATACTGCCTAA
GAGAACGCCTAGCATCTGCTATTCTTTTCAAAGTGAAACATCCACAGGATGTTCTCCCGC
CTGCTCTTGGAGCAACGATGTATGCGATTGCTTGTATCCTAACGTATGATGGTTTGCCTG
GTAATTTGACAACAAACCATGGTTCAGGTGAGAGTTCAACAGGTGCTAACGGATCAGCTC
AGGCAAGGAAAGTTGGTTTTATTCCGCCTGGCGATTTCCTTATGTCATTGCTATCAGACG
TACCGACCGATGCACCTCATTATCAGAAGTCATCTAATAATCATCCAGGGGGTGGTTCAG
GGCATAATAGGTCATCGAGGGCCCCCGCTGGTAGATTTAATCAGTCGCAGCGTCCTGGGC
GCAAGAACTCTGGACCAGGGAGCTCAGCACCACAATCTTTCAAAAGACAGCGGGATGCTG
CACGGTGACCAGCCATCCGGTTATGTGCAGAGGGCAGTTAGGATTTTATAGTATGTGTTG
AGGACATGTATGAAAAATGTAGGTGTCTGTACCCTATGTTTTCCTGTCATTACACGAGCA
AACAGCTGGGGGCAACATTTCACCGTGGTGCTGTTTGTTCGGTTCTTCCAATCAAATCTG
AAAATTAGGTCCATGCAGTTCAATACAAAAACAGACGGATATTTTGTTTATTAATAGAAA
AAAAAACTGTTAGCTGCTTAGCAGGTCGTTTTTGGCCTGCTACTGGATTATTTTGGTTGC
CATTTTATCAATGTTTGATTGTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3568 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g56190.1	1224	0.0	protein\|HVT1, putative, expressed
Brachypodium v1_2	Bradi2g51017.1	1196	0.0
Arabidopsis v10	AT2G30800.1	1299	2e-126	\| Symbols: HVT1, ATVT-1 \| helicase in vascular tissue and tapetum \| chr2:13120585-13126635 REVERSE LENGTH=1299