barSeed - Barley Seed Development Database

Probe CUST_34303_PI390587928

Source Contig U35_3570

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34303_PI390587928	Hv_44K_v2	TATTTTGCTCTTTTGCTGGATGGCTCGTCGTAATAATCCTAGGAACTGGTAATGTTTTTT	720	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367544	1265	2e-24	1144 - 1203	100	60 / 60	plus	ABC07927
MLOC	MLOC_34974.1	1898	2e-24	156 - 215	100	60 / 60	minus	ABC07927 ABC38480
JLOC1	JLOC1_22595.1	508	8e-25	117 - 176	100	60 / 60	minus
Harvest21	ABC07927	864	3e-25	721 - 780	100	60 / 60	plus	ABC07927
Harvest35	U35_3570	864	3e-25	721 - 780	100	60 / 60	plus

Contig Sequence (864 bp)

>U35_3570 864 Hv_44K_v2
CAGATTCTTCCATAGTTCCACGTCTCCCTCCCTTCCCTTCCAGGCTTAGACTCACCAAAA
TGGCGAAACCCTCCCAATCCCGCTTCCTTCTCGCCGCCCTCCTCGCCGCGGCCTTCCTCC
TCCTGCTCGCCCGCTCCGACGCCTCCAGGCCCACCCCCAACGCCACCGCGTACGACGAGC
TCCGCCTCCGTGGCTTCCCGCGCGGCCTGCTCCCGGCCAACGTTCGCGGCTACACGCTCG
ATGCCGGCTCGGGGGACTTCGCCGTAGACCTCGACTCCAGCTGCCGCATCGTGCTGCCGG
CGGGGAGCTACCTCGCCAACTTCAACGACCACCTCACCGGCCACCTCGACGACCGTCGCA
TCTCCGGTCTCAGCGGCATCCGCGTCAGGGCCTTCTTCCGCTGGTGGTCCATCACCGGGA
TCCGCGCCGATGGAGACGAGCTCGTCTTCGAGGTGGGCTCCGTCTCCGCCAAGTTCCCCG
CGCGCCACTTCAACGCCAGCCTCGAATGCCCCGCCAAGGCCGACTCTTAGTAACAAGGAA
CTCTTGCGTGCCTTGATGATACTGGCATATCATCAAGTCGCCTCGACGTGGATCCCCATG
ATCGTTTTTAATCTCTTCACTGCCTTTGTAATTACCACTTGTGTACAAGACTACAAGTCT
GGATCCCTAAGCCACCACTACACTTTCAACACCAAGAAAGCCGGATAATGTAAAGGTTCT
TATTTTGCTCTTTTGCTGGATGGCTCGTCGTAATAATCCTAGGAACTGGTAATGTTTTTT
TTATTTTAGTTTGTAATATATACAACTTCTGGTGTGGCGAGTATACAACTTAACTTTTGT
CTTTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3570 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g41220.2	161	6e-66	protein\|DUF538 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g42560.1	159	3e-70
Arabidopsis v10	None