barSeed - Barley Seed Development Database

Probe CUST_34302_PI390587928

Source Contig U35_3571

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34302_PI390587928	Hv_44K_v2	AAATATTGTGAATGAGGGAAGTATCGAAGGGAGGAGCCCAACTTCATTGTTGCCAAAAAA	1495	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.963	1.943	1.150	0.789	0.422	0.431
Raw	4555.627	7050.257	3611.030	3911.270	737.739	816.384

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3630.1	2353	9e-22	13 - 67	100	55 / 55	minus	ABC08180
JLOC1	JLOC1_2180.1	2219	5e-22	2095 - 2149	100	55 / 55	plus
Harvest21	ABC08180	1566	3e-25	1496 - 1555	100	60 / 60	plus	ABC08180
Harvest35	U35_3571	1566	3e-25	1496 - 1555	100	60 / 60	plus

Contig Sequence (1566 bp)

>U35_3571 1566 Hv_44K_v2
GAAAAGCTATCTGGTGTCAACTCAAAGAAAAGTAGTAAGGTTGGCACTTCCACTGAGTCC
AAGGTGACTGAACATTCTAAGGTTGCTAGCGATAACCAGGACGTTGCATCTGGGGAGCTG
TCACCAGAGACAAATGGTGGAAATAATAAGCTGACGGTAGAGGCTTGCAACAAAGTTACT
GATGATACATCAAATCCTCTTGATAGTACACCTGCGGATGGCACATCAAAGCCTCTTGAT
AGTATACCTGCTATAGATAAACCAAAGCGAGGCCGGCCTCCTGCAGTAAAGTCACAGGAG
AAGAAGCCTGTTGGGAAGAGCCAAGGATCAGGTCTTGAATCTAAAGAAATTCGCTCAGGC
AGTACTTCCGGTGGAAGACCTGCAAGAGGACCCGCTAAAGATAACAAATTATCATCAAGA
AAGTCCAGTGAAGAAGAATCTTCAAAGAAGCCGCCAACGGCCAGTTCTGATCTGTGGAAA
GCGGACACCCCCTCTGATGAAGATACCGACGAGGATCTCAGTTTGAAGGAAATGGCCTCT
CCTAAATCATTGACCAAGACGGGAAAAAGCAAAGGCCAACCAGGGTACAGTGGTGTGTCA
AAAAGGAAACTTGTGCAGGAAGCTGAAGAGGTTCCTCAGTCAAAGAAGAGCAAAGTTCTT
GATGGGAGCCTTGTTGGCTCAAGAATCAAAGTGTGGTGGCCTGATGACAAAAAGTTCTAT
GAGGGTGCTGTTAAGTCATTTGATGCTTCTTCAAAAAAGCACAAGGTTGTGTATGACGAT
GGTGATGTTGAACGTCTGCAACTTAAGAATGAAAGATGGGAGTTCATTGATGAGGAGCAA
GACGAGAATCCCAATGAAGCATCTGATATCGGGTCTCGTGGTAGGAGAGGCAAGCAGGAC
AGCACTGGCGACAGCAATCCTCCCAAGAAAAGAGGGCGTCCGAAGGTTGTGGGTGAGGAT
AGTCCAGTGACTTCAGCCAAATCGGAGGCGAAGACTGCAGAAAAGGGTGCTGAAGGTGGG
GGGAGGTGGCCTCGATCTGCTGGCAAGGGAAGCAGCAAGGATGAGTCTGGCGGCAAGACT
CCAAAAGGCGCAAGCCCTGTGAAAGCTTCTGATGGATCCAAGAGCAACGGCCTTTCAGGC
AAACGGAAGCCCAAGGAGAAAGTACCGGAGTCATCTGCTGATGAAGAGGAGGAAGAAGAA
GAGCCGGTGTCTGCTAAGGCCTCCACAGGGAAGAAGCGCAGAAGGAAGGCGCTCAACTAG
TTGCTCTACTGCTGAACCAGCTAGCTAATTGTTGTAGCTAGTCTCCTGATTAGTAGCTGT
AATGTTTAGGCTTTACTTGTGTTGTTGCGTGTGGTCGGCGTTGAAACCTCTTTGGAAGAT
TGGATGCCATGCTTGCTTTGGTTCAAGCCGTTTCCTTTTATTATTGCGTTGTGATGTTAA
TGTAGTAGTAGTTGGGTTACCTTGCTATCTAAGAAGTGAACTTTGTAGTACTACCAAATA
TTGTGAATGAGGGAAGTATCGAAGGGAGGAGCCCAACTTCATTGTTGCCAAAAAAAAAAA
AAAAAA

Homology of Contig U35_3571 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g42320.1	847	1e-92	protein\|AT hook motif family protein, expressed
Brachypodium v1_2	Bradi5g14790.1	787	4e-100
Arabidopsis v10	None