barSeed - Barley Seed Development Database

Probe CUST_34300_PI390587928

Source Contig U35_3573

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34300_PI390587928	Hv_44K_v2	GTTCATCTGCTGATAGTTGTAGGGTCGTACTTTCCTGTGATGGAGAATTTTGTGTTGCAC	1397	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.512	1.733	1.110	0.868	0.371	0.446
Raw	11111.330	19802.283	11194.543	13872.810	2067.380	2697.533

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249394.1	1575	2e-24	1403 - 1462	100	60 / 60	plus	None
MLOC	MLOC_48319.1	435	2e-24	243 - 302	100	60 / 60	minus	None
MLOC	MLOC_46500.1	328	3e-21	239 - 298	97	58 / 60	plus	None
JLOC1	JLOC1_31048.1	436	8e-25	244 - 303	100	60 / 60	minus
Harvest21	ABC05968	3207	3e-25	1379 - 1438	100	60 / 60	plus
Harvest35	U35_3573	1478	3e-25	1398 - 1457	100	60 / 60	plus

Contig Sequence (1478 bp)

>U35_3573 1478 Hv_44K_v2
AAAAAAACTGAAAATAGCCCGCGGCCTCCCTCTTCCCCCCCTCTCCCCGCCCCCGCCGCC
CTCGCGCGCCGCCTGCCGCCGTCGCCGGCGAGATGGGAGTCAAGGGTTTGACGAAGCTGC
TGGCGGACAACGCGCCCAAGTCGATGAGGGAGCAGAAGTTCGAGAGCTACTTCGGCCGCC
GCATCGCCGTCGACGCCAGCATGAGCATCTACCAGTTCCTTATTGTAGTTGGAAGGACAG
GGATGGAAACCCTTACAAACGAAGCCGGTGATGTCACCAGTCATTTGCAAGGCATGTTCA
GCCGGACAATAAGGTTGCTCGAGGCAGGAATTAAACCAGTATATGTTTTTGATGGCAAGC
CTCCTGAAATGAAGAAGGACGAGCTTTTAAAAAGACACGCAAAGAGGAATGAAGCAACAG
AAGAGCTGACGAAGGCAGTAGAGGCAGGAGATACGGATGCAATTGAAAAATTCAGCAAGA
GGACTGTAAAGGTCACGAAGCAGCACAATGATGATTGTAAGCGTCTACTAAGACTGATGG
GTGTTCCTGTTGTAGAGGCTCCTTGTGAAGCAGAATCACAATGTGCTGCCCTTTGCAAGA
GTGACAAGGTGTATGCTGTTGCATCAGAAGATATGGACTCACTTACTTTTGGAGCTCCAC
GGTTTGTTCGTCATTTGATGGATCCAAGTTCGAGGAAAATACCTGTAATGGAATTTGAAG
TTGCGAAAATTCTAGAGGAGCTTGAATTTACCATGGACCAGTTCATTGACTTGTGCATCC
TCTGTGGATGTGACTACTGTGATAGCATTAAAGGCATCGGTGGTCTTACAGCTCTGAAGC
TCATTCGTCAGCATGGGTCTATCGAGGGCATCCTGGAAAATATTAATAAAGACAAATATC
AAATTCCTGAGGACTGGCCTTATCAAGAAGCTCGGCGCATGTTCAAGGAACCCAGTGTAA
CACTGGATATTCCCGAGCTCAAATGGACCGCGCCTGATGAGGAGGGGCTCGTGAATTTTC
TGGTGAAAGAAAACGGCTTCAGTCAAGATCGTGTGACTAAGGCCATAGAGAAGATTAAAT
CGGCAAAGAATAAATCATCCCAAGGAAGGCTTGAGTCATTTTTCAAGCCAACTGTTAGCA
CATCAGTGCCACTGAAGCGGAAGGAAACTTCAGAGAAACCAGCCAGTGCAGCTGCTGGCA
AAAAGACGAAGTCAACCCGTGGAAGGAAGAAATAAGTTGATGTGCGAACAAAAGCTGCAG
TGGCATCCTCAGTTAGATCGTTCACCTCCTGTTGTGTAACTAAAAACTTTGTTCGGTGTT
CTCTTGTCGTGTCATGTTCGAAGATTAGGTAAATTAGTGACTTGAGAAGGGAAAAAACGA
AACTCTGTCTCATGTTTGTTCATCTGCTGATAGTTGTAGGGTCGTACTTTCCTGTGATGG
AGAATTTTGTGTTGCACTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3573 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g46270.1	340	protein\|FEN1A - Putative flap endonuclease protein, expressed
Brachypodium v1_2	Bradi2g18290.1	381
Arabidopsis v10	AT5G26680.1	453	5-3 exonuclease family protein \| chr5:9311882-9315458 REVERSE LENGTH=453