barSeed - Barley Seed Development Database

Probe CUST_34297_PI390587928

Source Contig U35_3576

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34297_PI390587928	Hv_44K_v2	CATGTAATTTAACCGTGCTAGGCTAATTTGATGGGATCTCGGTATCTTTGTTGCAAAAAA	1716	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.388	1.342	1.148	0.877	0.397	0.414
Raw	3058.530	4581.517	3463.380	4100.013	665.635	747.686

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9787.1	4099	3e-22	3838 - 3893	100	56 / 56	plus	ABC10037 ABC37003
MLOC	MLOC_9787.2	4178	3e-22	3771 - 3826	100	56 / 56	plus	ABC10037 ABC37003
JLOC1	JLOC1_6347.1	4052	1e-22	3724 - 3779	100	56 / 56	plus
Harvest21	ABC37003	314	1e-23	12 - 71	98	59 / 60	minus	ABC37003
Harvest21	ABC10037	1794	5e-23	23 - 78	100	56 / 56	minus	ABC10037
Harvest35	U35_3576	1789	3e-25	1717 - 1776	100	60 / 60	plus

Contig Sequence (1789 bp)

>U35_3576 1789 Hv_44K_v2
GGTGGCATGGTCACGAGCAGAACTGCCTGTTGCTTGAGGACATTTTAAACATGGAACATC
AGACACAGCTAAAGAAGCTAATATGGTCTCCCAAACTATTTCCTGTGCGAAAAGCAAGAC
AAAAAACTCGTATGAGATATATCCTAGGAAAGATGAAGTTTGGGCCCTTCACAAGGGATG
GGACATCGGCTGGAGTTCGGATGCTGACAGCCACACAGATTTTGAGTATGAACTTGTTCA
AGTTGTCTCGGATTTCACAACAAGCACAAGCATCATTGTTATGCCACTTATAAAAATAAA
AGGCTTTGTTAGCTTATTTATGCAGTCTAAAGAGGCAACTCCGTGTGTGATACCTCAGGA
TAACACACTAAGATTTTCACATTGTGTCCCTCATCATTTCATGCGTGGGACTGAAAGAGA
AGGCATTCCAGTAGGAGCTATTGAACTTGATCCTGCAGCACTTCCCCTTAACTTGGAAGA
GGCTTTTGCTTCTGTTGTTCTGGAAAGCACAGTAAAAGGCAAGGGGGTTGATACCAAGTA
TGCTGGTTCATCCAGTGGAATTAATTCTGGCAAGGGGCCTGAGAAGGTTGGGGAGGTGCA
ACATGCTACATGCATGAATACAGGGCTCTTTACAAGAGCAACAAAGGAAGAGAAGAAAGA
GCATCATACTCCATCTACTGTAGAAGGTGTGGATGTTAATGAGGAATCTGATGGCATTGT
CCAGGATGAATTTGAATGTCCTGACTCAGAATTCTATGAATTTACAGAAATAAGGTTGAT
TCAGAAGTTCGAACCTGGGCAGGTCTGGGCTCTTTATAGTGATATGGACAAGTTCCCCAA
TTACTACGCCATCATAAAGAAAGTCGATCTCAAGAATAATAAAGTACAAGTGAAATGGCT
TGATCTCTGTCCCCAGGGAGAGGAGGAGAAAAGACTGACTGGTACAGAAGATCGGGCTGT
TGCGTGTGGAATCTTTAGGGTTTCCTCTGGAAATGATGGTGCTGCGACTTACACTGGTAC
AGAATCATTTTCTCATCCTGTGGTTGCTAGATCAACTGGTAGAAAAAACGAATATGAAAT
AATCCCTCGCCTTCGTGACATCTGGGCCGTTTACAAGAACTGGAAGGCTGGATGGACTGC
AGAAGACTTTAAAAACTGTGAGTATGAATTTGTGGAGATTGTTGGCCAGACTGATTCGTC
CATACAAGTTCAGCCTTTAGGAAAGGTGGATGGCTACAGGGCAGTATTTAGAAAAGAGGC
AAATGTGAAAACAATAAGCAAGGATGAGTACCCAAAGTTCGCTCACCACGTCCCTTGCTT
CCATCTGACAAATGAGAAAGCAGGCAAGCTTCGAGGCTGTGTCGAGCTCGATCCTTATTC
AGTGCCAGAGGTGTTTCTCTTCACCAGTTAAATGTGGGATAACCTTATTTGCGGTGCATC
TTTAGGAGCTGAAGTTGTGAGAACCAATGTTCTGACGAAGCTGGGCAGTCCACGTCAACA
TTGTCGCATTGGGCTTTTGGCTGTTTTGAATACACCCATGAAGGTATGAACTTGTCAGGC
GAATGGGGGTCTTTTGCATCCATCAGTGACAGTTTACAAGCGGATGTTCCTGCAACAGCT
TTCTATAGCGAATTAGCAGCTTAGTAGCATTTTGCCGTGTCTAGTCCCAAGTGTCCCCCC
TTCATTTCCTGCTTGTGTAATCAAAAATGCTGGAACCATGTAATTTAACCGTGCTAGGCT
AATTTGATGGGATCTCGGTATCTTTGTTGCAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_3576 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g34440.1	1019	0.0	protein\|dnaJ domain containing protein, expressed
Brachypodium v1_2	Bradi1g27400.1	1018	0.0
Arabidopsis v10	None