barSeed - Barley Seed Development Database

Probe CUST_34293_PI390587928

Source Contig U35_8290

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34293_PI390587928	Hv_44K_v2	AAAGTCAGCGTCTTTTCTTGCCCTGCGTCTCGGGTCCATGGATTCTTCCCCCGCCGCGAC	274	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.568	1.159	1.699	1.400	0.914	0.834
Raw	3.882	15.316	20.757	23.789	5.592	5.575

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44015.1	473	7e-23	130 - 189	98	59 / 60	minus	None
JLOC1	JLOC1_28484.1	478	4e-23	135 - 194	98	59 / 60	minus
Harvest21	ABC17470	473	3e-25	275 - 334	100	60 / 60	plus
Harvest35	U35_8290	473	3e-25	275 - 334	100	60 / 60	plus

Contig Sequence (473 bp)

>U35_8290 473 Hv_44K_v2
CTCCATTCCTTCCTTCCTTCCTTCCCCCACCCAACAACCGGCCCTCCCTCCCTCCCTCCA
CAGGGCCACCTCCTCTTCCTCCCAACACTCCTCCTCCTCCTCCCCCACCACCGTCGCCGC
CGGCCAAGCGATCCGACGCCCTCCTCTCCCCGCGTCGCCGGATCGGTCCCCGAGGTTCAG
CCGTAACCAGCCGCCGGCGGAATAGGGAGAGGGCAGGAGAGAAGAGCGGCCCTGAGCTGA
GCTCTGCCGGCCAGATCTGAGCCCGGACGGAGGAAAAGTCAGCGTCTTTTCTTGCCCTGC
GTCTCGGGTCCATGGATTCTTCCCCCGCCGCGACGGCGCCGGCGTCGTACTGGTGCTACA
GCTGCGACCGCTTCGTGCGGGCCGCCCCAGCGCAGGACGGGGCCGACGTTGCCTGCCCGG
GCTGCGGCGGCGGGTTCCTCGAGGAGATGCGCCGCAACCCGCCGCCCCCCGCC

Homology of Contig U35_8290 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None