barSeed - Barley Seed Development Database

Probe CUST_34288_PI390587928

Source Contig U35_8295

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34288_PI390587928	Hv_44K_v2	ACGTGGAGAAGCTGAAGAAGAAGCTGCGGCACGAGGAGAACGTCCACCGAGCTCTGGAGC	588	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357204	2398	2e-24	521 - 580	100	60 / 60	plus	None
MLOC	MLOC_82092.2	1859	2e-24	1668 - 1727	100	60 / 60	minus	None
MLOC	MLOC_82092.3	1495	2e-24	1075 - 1134	100	60 / 60	minus	None
MLOC	MLOC_82092.1	2385	2e-24	1733 - 1792	100	60 / 60	minus	None
MLOC	AK249621.1	2926	2e-23	1368 - 1425	100	58 / 58	minus	None
JLOC1	JLOC1_54602.4	1396	8e-25	146 - 205	100	60 / 60	plus
JLOC1	JLOC1_54602.3	2427	8e-25	591 - 650	100	60 / 60	plus
JLOC1	JLOC1_54602.2	2430	8e-25	591 - 650	100	60 / 60	plus
JLOC1	JLOC1_54602.1	2001	8e-25	162 - 221	100	60 / 60	plus
Harvest21	ABC19990	546	3e-25	394 - 453	100	60 / 60	plus
Harvest35	U35_8295	743	3e-25	589 - 648	100	60 / 60	plus

Contig Sequence (743 bp)

>U35_8295 743 Hv_44K_v2
GGGCTGCGCTCTGCAACCTGCGAGCTAAACTCCATTCCCACGGCCGAGGGAAGAGAGAGA
GAGGCCAACCGCGAGCCGAGAGCGCCACGCATCGCCATCGCCGCAATCCCAATTCCCACG
CACGCCAACCAATCCTGCCCTTAACCCAATCGGGAACGCTACCCAACCGAATCCGCCAGC
AGAGGCCGCGCTTGCGGTGGCTTGGACCGCGCGCGCCCCTTCCCGCCGCCCAGGAGCACC
GCCAGAGCTCGCGGTGCCTTTAATGGCGCTGGAGACTTCCCCCGCGGTCCGTAGGCCCGC
CACGAAGACGATTTAACTCGCAGGCTCCTTGCTCCGCTCCGTCGCAGCGCACGCACCACG
TGGTGTTGACTGTTGACAGAGGCGAGCACACGGCGTCGGAGATGAATGGCCGGGCTCGGA
GGCCGGCGGCGGCGCACGGCGCGAAGGCCGCCCCGAAGGGCGACAGGATGATGCAGAAGG
AGCAGAGGAAGGCCATGCCGGCCAAGGCACCGACCGCCAACGCGGCGGCCAGAGGCATGG
CGAGCAGAATCCAGTCGAGGAGAGAGCGGAAGCTCGCGCTGCAGCAGGACGTGGAGAAGC
TGAAGAAGAAGCTGCGGCACGAGGAGAACGTCCACCGAGCTCTGGAGCGGGCCTTCACCA
GGCCGCTGGGCGCGCTGCCTCGCCTCCCCCCGTACCTGCCGTCTCAAACGCTGGCTCTTC
TCGCGGAGGTGGCGGTGCTGGAG

Homology of Contig U35_8295 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None