barSeed - Barley Seed Development Database

Probe CUST_34285_PI390587928

Source Contig U35_8298

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34285_PI390587928	Hv_44K_v2	TGTTGTTGACAGGTGGCCAAGGTGGCTTGTTGATGTTTGCAGTATTCTTATTTAGCCGTC	699	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.375	1.433	1.154	0.913	0.412	0.449
Raw	1395.667	2263.345	1611.667	1967.151	320.557	375.888

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13603.1	1837	2e-24	54 - 113	100	60 / 60	minus	ABC16722
MLOC	MLOC_13603.2	590	2e-24	16 - 75	100	60 / 60	minus	ABC16722
JLOC1	JLOC1_9220.1	835	8e-25	760 - 819	100	60 / 60	plus
Harvest21	ABC16722	819	3e-25	61 - 120	100	60 / 60	minus	ABC16722
Harvest35	U35_8298	819	3e-25	700 - 759	100	60 / 60	plus

Contig Sequence (819 bp)

>U35_8298 819 Hv_44K_v2
GCAAACAAGGTGAAGGCAATCCGTCGTTTAAGGGATCTACTCACCACAAAACTGCCCCCA
GGAACTTTTCCAGTCAAGGTTGCCATTCCAGTTGTACCGACGATCAGGGTTCTTGTGACA
TTCACAAAGTTTGAAGAGCTACAGCCACTAGAAGAGTTCAGCACACCTCCTTCCAGCCCC
GACAATTGTAAGAGCCCAGGAGCCCAGATGTCTTCAAGCTCCTGGGTTCAGTGGATCAAG
GCTCCTTACCGCCAGAACTTCTCGACAGCACAAGGTCCCAGCAACCGTGTGGAGGACATC
CAAGACCCTTTTGTTATCCCTGCTGATTACGCCTGGACTACGCCAGGAGAGAAGAAAAAG
AAGACACAAGAAAACAAGAACAAGTCGAAGAAAGGCAGAACTGCGTCTTAGGTATTTGGT
GGTCTGAGATACGTCGCAGACTTGCCTAGTGTCATTCGTTATAGGAGCAAATACTCAGTG
ATATCCTCTTATCTAACAGGAATGATGAGTGGGAAGGTTTGAAGATTTCGACCTGCTGCA
GGCAAACAACCAGTGTCGAATGTCGAGAAACGACCGCTTGTCTAGTTTCGATGTAATAAA
ATATTTGTTGTTAACATTCTTTCGTTTAACCCAAATGATTCCAAACCTGATTAATATTGC
TGTAGCATTGCTAGTAGATTTGGCCAAGGTGGCTTTTTTTGTTGTTGACAGGTGGCCAAG
GTGGCTTGTTGATGTTTGCAGTATTCTTATTTAGCCGTCAGAGCATCATCATCATCATTA
TTAGTAATATTATTATTGTTATGAAAAAAAAAAAAAAAA

Homology of Contig U35_8298 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g25460.1	657	1e-65	protein\|ankyrin repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g28990.1	655	9e-68
Arabidopsis v10	None