barSeed - Barley Seed Development Database

Probe CUST_34273_PI390587928

Source Contig U35_13313

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34273_PI390587928	Hv_44K_v2	ATGATTGACATTTTAACACTGCAAACTGCGACCGATGATTTTGCGGAGAGCAACAAGCTC	68	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363995	2125	2e-24	1008 - 1067	100	60 / 60	plus	ABC25448 ABC34971
MLOC	MLOC_36814.1	1819	2e-24	921 - 980	100	60 / 60	plus	ABC34971
JLOC1	JLOC1_23755.2	2157	8e-25	1264 - 1323	100	60 / 60	plus
JLOC1	JLOC1_23755.1	1814	8e-25	921 - 980	100	60 / 60	plus
Harvest21	ABC23150	367	3e-25	69 - 128	100	60 / 60	plus
Harvest35	U35_13313	368	3e-25	69 - 128	100	60 / 60	plus

Contig Sequence (368 bp)

>U35_13313 368 Hv_44K_v2
CCGAAGCAGAGCAGCCATATCCCAGTTACTCCGCTGAAGTCGAAGACGTTGAGAGTGTAG
ACTCGATCATGATTGACATTTTAACACTGCAAACTGCGACCGATGATTTTGCGGAGAGCA
ACAAGCTCGGGGAAGGCGGATTCGGTGCGGTGTACAAGGGTACGCTCCCAGATGGCGAGC
TAATAGCAGTGAAGAGGATGTCGAAAAGCTCAACCCAAGGACTGGAGGAGTTGAGGAACG
AGCTGGCTTTGGTTGCCAAGCTCAAGCACAAGAACCTTGTCTCGCTCATTGGTGTTTGCC
TGGAGCAGCAGGAGAGGCTGCTAGTCTACGAGTTCCTTCCTAACCGGAGTCTCGACCTCA
TTCTTTTC

Homology of Contig U35_13313 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g35390.1	639	6e-57	protein\|TKL_IRAK_DUF26-lc.17 - DUF26 kinases have homology to DUF26 containing loci, expressed
Brachypodium v1_2	Bradi1g25552.1	671	1e-60
Arabidopsis v10	None