barSeed - Barley Seed Development Database

Probe CUST_34272_PI390587928

Source Contig U35_13315

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34272_PI390587928	Hv_44K_v2	AAATGGTTGAACATGCCCAAAGGCTTATTTCTGGGAACCCATCGCTTGGACAACGAATCA	636	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.240	1.053	1.470	1.263	0.608	0.535
Raw	277.656	303.316	446.955	576.160	102.564	100.035

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54704.2	2499	2e-24	1213 - 1272	100	60 / 60	plus	ABC10620
MLOC	MLOC_54704.1	2043	2e-24	559 - 618	100	60 / 60	plus	ABC10620
JLOC1	JLOC1_35222.2	2673	8e-25	1246 - 1305	100	60 / 60	plus
JLOC1	JLOC1_35222.1	1993	8e-25	566 - 625	100	60 / 60	plus
Harvest21	ABC23713	716	3e-25	637 - 696	100	60 / 60	plus
Harvest35	U35_13315	716	3e-25	637 - 696	100	60 / 60	plus

Contig Sequence (716 bp)

>U35_13315 716 Hv_44K_v2
GGCCAGCTCCACGCGAGCCACCACCCTCCCGCCCCGCCCCCAAAACCCTAGCTATCCCCC
CGCCGCGGCGCCCGGAACCTCGGGCGGCGCCGGGATCCAGGAATGGCGTCGGCGGACATG
TTCCCCAACGTCTCCTTCTCCGACGTCAACGCCGCCGCCTCGCAGGAGGCCGCCGGGAAG
GCGGTGTTCGGCCTGGGCCCCGCCTCCGGGGCGGCGCGCCTCAGCCTCGTCAGGCCCGGC
GCGGAGCAGGCGTTCCAGATCGACCTCTCCGACGCGCAGATATTCAAGCTGGGGCAGATG
GAGTGGCTCTGCGTGAGCGGCGAGACGGAGGCTAAGGCTGGCGTGGAGGAGGCGAGTCAT
TGGAGAATGGATCAATAGTGGCTTGTAAAAGTAAATTTGATACAAAAATTGAGGCATCAT
CAGCACAGATGTATTTCCACTACTATGGCCAGCTATTACATCAGCAAAATATGTTGCAAG
ATTTTGTGAGGACAGGAACATACTATGCTGCCGTAATGGAAAACCGATCCGACTTCGAGG
GTAAAGTCGTGGTTGACGTTGGAGCTGGTAGCGGTATTCTTTCGTTATTTGCTGCACAGG
CTGGTGCCAAACATGTCTATGCAGTTGAGGCATCTGAAATGGTTGAACATGCCCAAAGGC
TTATTTCTGGGAACCCATCGCTTGGACAACGAATCACGATCATCAAAGGCAAAGTC

Homology of Contig U35_13315 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g47500.1	545	5e-81	protein\|histone-arginine methyltransferase CARM1, putative, expressed
Brachypodium v1_2	Bradi1g18180.1	537	8e-87
Arabidopsis v10	AT3G06930.2	535	4e-60	\| Symbols: ATPRMT4B, PRMT4B \| protein arginine methyltransferase 4B \| chr3:2185469-2189296 REVERSE LENGTH=535