barSeed - Barley Seed Development Database

Probe CUST_34258_PI390587928

Source Contig U35_25304

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34258_PI390587928	Hv_44K_v2	ACTGACAGATTTTAACCACCTGTATCTGCAGAGTTTGAAAGATCCTAAAGTTTACGGTAA	746	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.966	2.176	1.153	0.785	0.323	0.350
Raw	726.083	1223.669	585.149	640.980	87.477	106.153

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_3620.1	2961	8e-25	2737 - 2796	100	60 / 60	plus
Harvest21	ABC22995	821	3e-25	747 - 806	100	60 / 60	plus	ABC22995
Harvest35	U35_25304	821	3e-25	747 - 806	100	60 / 60	plus

Contig Sequence (821 bp)

>U35_25304 821 Hv_44K_v2
ATCCTGAGATTGAGCTACCTCTTTGGCTGGTTCAGATGTTCAAGACTACCAAGGGTGGAA
ACAGGATGATTTCATGGGGAATGTCTGGCAAAGAGGCAGATCCAGCTGCATTATTTCGAC
TATATACCAATTATGGCCGGCATGCAGAAGCAGCCAACTTGTTGGTGGAGTACCTGGATT
CGTTTGCATCATCGAGACCGATGGACGTGCTGCACCGCAAAAAGATGTCTGCCGCCTGGT
TCCCATACACCACTGTCGAGAGGTTTTGGTGTCAGCTTGAAGAGATGCAAAGCGCTGGCC
ACAGTGCTGATCAGTGCGATAGGCTCAAGAAGTTGCTGCATGGAGCCCTGATGAACCACC
TGCAACAAGTGGTCGTGGATTCAGAAGACGTACTGTCATCAGTTGGAGGAGGTCAAGGAG
TGGAGAGCCAAAGCAGCTGAGATCTTGTTGGTCGTGGATTACATACATACACAGGCCAAA
GCATTGTTGTATCCTGTATGTAGGTTCTGTATGTTTTTCCCCAGAAACGCAGGCTCTGTC
TGGCTGATAGTTTCTGTGGGAGACGTTTGACAGAAAATGCTCAGGACAGCAGCTAACGTT
CGTCTCTGTAGATGATGGAGTGATGTTCCGTTTCTAATGTGAATATGCTAGCATGTTAAA
GTTCCATGTCGTTTGGTTGATGACAGACGGTTGGGTAGCATATGATGCCCTCACTCGGTA
TCGGCAGCACACAACGTCACCAAAAAACTGACAGATTTTAACCACCTGTATCTGCAGAGT
TTGAAAGATCCTAAAGTTTACGGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_25304 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g04970.1	1505	2e-65	protein\|expressed protein
Brachypodium v1_2	Bradi3g03637.1	1523	3e-69
Arabidopsis v10	None