barSeed - Barley Seed Development Database

Probe CUST_34244_PI390587928

Source Contig U35_25311

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34244_PI390587928	Hv_44K_v2	TTTTGTTCTTCGCTTATCTTCTGCTGGGAAATAGTATTTGGGAGAACTTTGCCTCGGTTC	661	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65780.2	2175	2e-24	573 - 632	100	60 / 60	plus	ABC10888 ABC38207
Harvest21	ABC22767	724	3e-25	662 - 721	100	60 / 60	plus
Harvest35	U35_25311	724	3e-25	662 - 721	100	60 / 60	plus

Contig Sequence (724 bp)

>U35_25311 724 Hv_44K_v2
GGGAAGATGAAAATGCTGACAACGGCGGCATCGTTTGTCAATTCACGTTTACATGCAGTT
AAAGCCCAGACCCTGGTGATTGCTAGTGGAAACGATGAACTGTTGCCAAGCCGCGACGAG
GCTGAAAGACTACATGGCGCATTAAAGAAATGCAGAATCCGCCACTTCAGGGATAAAGGC
CACAAAATATTGTTGGAAGATGGATTTGATCTAGCAACAAGCATTAAAGGATCTACATAC
TATCGCCGCTCCAGGCAGACAGACTTTGTCTTAGACTATCTACCGCCAACTCCTGATGAG
CTCGAAAAGGCGATTGATCACAACAGGCTCCTGAATTTTGCCACCGACCCGGTAATGCTA
TCAACACTGACTGATGGGAGGATAGTGAGAGGACTAGCAGGGATGCCAAGGGAGGGACCT
GTCTTGCTCGTTGGGTACCACATGCTCATGGGGTTTGAGCTTGGACCCTTGGTCACAGGA
GTGCTGAGGAGCACTGGAATCCACATGATATGAGGATATGATCCGGCGGCTTCTCCTCGT
CTTATCCATCCCCCCCATCGCCTTCTTTCTCGAGCGGATCTTCTCGCTCACTCACATCTG
GTCCGTCAGACTGGTGCCAAGAACCGCGTCTCTGAGAGCCAGGGTTAATATTCGTACTAG
CTTTTGTTCTTCGCTTATCTTCTGCTGGGAAATAGTATTTGGGAGAACTTTGCCTCGGTT
CGAT

Homology of Contig U35_25311 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g33530.2	497	3e-82	protein\|expressed protein
Brachypodium v1_2	Bradi4g34846.1	572	7e-92
Arabidopsis v10	None