barSeed - Barley Seed Development Database

Probe CUST_34237_PI390587928

Source Contig U35_25319

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34237_PI390587928	Hv_44K_v2	ACGGACGTTCGCGTCGATCAACAACTACCAGGTGGACGGGAACAAGGAGATGATGGCGAT	255	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360581	2714	2e-24	1372 - 1431	100	60 / 60	plus	ABC07074
MLOC	MLOC_69926.3	1595	2e-24	1137 - 1196	100	60 / 60	minus	None
MLOC	MLOC_69926.2	1366	2e-24	1137 - 1196	100	60 / 60	minus	None
MLOC	MLOC_69926.1	2270	2e-24	1192 - 1251	100	60 / 60	minus	ABC07074
JLOC1	JLOC1_46365.1	2259	8e-25	1017 - 1076	100	60 / 60	plus
Harvest21	ABC22766	437	3e-25	256 - 315	100	60 / 60	plus
Harvest35	U35_25319	437	3e-25	256 - 315	100	60 / 60	plus

Contig Sequence (437 bp)

>U35_25319 437 Hv_44K_v2
CACACGCCAAATCAGCGCTCGGAATCCAAGGCTGTTCTGGGTGTCAGCGGCGGCTCCCCT
GACGTCGGTGATCGCCTCCACCATCATCTCCTACTTGTGCAGAGGCCATGCCATCAGCAT
CATCGGCGATCTCCCCAGGGGAGTGAACCCTCCATCCATGAACATGCTCGTCTTCAGCGG
CTCCTACGTCGCCCTGGCCATCAAGACCGGGATCATGACCGGCATCCTGTCCCTCACCGA
GGGGATCGCGGTGGGACGGACGTTCGCGTCGATCAACAACTACCAGGTGGACGGGAACAA
GGAGATGATGGCGATCGGGGTGATGAACATGGCCGGCTCCTGCGCCTCCTGCTACGTCAC
CACGGGCTCCTTCTCCCGCTCCGCCGTCAACTACAGCGCCGGCTGCCGGACGGCGGTGTC
CAACATCGTGATGGCCG

Homology of Contig U35_25319 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g05160.1	671	2e-81	protein\|sulfate transporter, putative, expressed
Brachypodium v1_2	Bradi1g51200.1	648	3e-87
Arabidopsis v10	AT3G15990.1	653	5e-71	\| Symbols: SULTR3;4 \| sulfate transporter 3;4 \| chr3:5427081-5430679 FORWARD LENGTH=653