barSeed - Barley Seed Development Database

Probe CUST_34234_PI390587928

Source Contig U35_13342

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34234_PI390587928	Hv_44K_v2	AAGAAGCTAAATCAGTTGGTCAGCTCCGGAGCAAAAGGTTAGCAAATCTGCTTGGCTGTT	653	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368872	2258	2e-24	622 - 681	100	60 / 60	plus	ABC11518 ABC19976 ABC23613
MLOC	MLOC_4572.1	2282	2e-24	1552 - 1611	100	60 / 60	minus	ABC11518 ABC19976 ABC23613
MLOC	MLOC_4572.2	2141	2e-24	1552 - 1611	100	60 / 60	minus	ABC11518 ABC19976 ABC23613
JLOC1	JLOC1_2865.1	2356	8e-25	540 - 599	100	60 / 60	plus
Harvest21	ABC22102	729	3e-25	654 - 713	100	60 / 60	plus
Harvest35	U35_13342	729	3e-25	654 - 713	100	60 / 60	plus

Contig Sequence (729 bp)

>U35_13342 729 Hv_44K_v2
GCTCAACCCCAGCACAGCAAGCGCAAGGTGGTGAGAGAGAGGCGAGGGGGGAGAGGGAGC
GAGCGAGAGCCGAGACCGAGAGAGATCCAATCCAATCCAGCCCAGTCCCCTCCCCATACC
CCGCCTCCGCCTCCTCGATTCGCTCCGGTTCCGCGCTCGCTTGCTCAGGCGAGGCAGGTC
CGTGCTCCGCCTCCGTTACGCTTGCCGCGCTGCCGCCTGCGGCCTCGCACGCTCGACTCC
GACTCCGACTCCGCGCTCAGATCCGCGTGCGCCGCCGACGACCTGCCCCGCTCTCAGGCC
GGTCGCTGCTCTGCTTGCAGGTTCGGCGGCGAGGGGGATCGGAATGGGCGCGCGGGTGTC
CAAGGCCACCTCCTGCTGCTGCCTCCGCGGGCAGCTCCACGGCAGCACCCGCCTCGACGA
CCCCGGCTCCGAGGAGGACGAGCAGGGGGAGGCCTACGAGCTGCCGGCGTTCCAGGAGTA
CACCTTCGAGCAGCTGCGGCTCGCCACGGCCGGCTTCGCCGTCGACAACATCGTGTCCGA
GCATGGCGAGAAGGCGCCCAACGTCGTCTACAAGGGGAAGCTCGACGCCCAGCGCCGCAT
CGCCGTCAAGCGCTTCAACCGCTCCGCCTGGCCCGACCCGCGCCAGTTCCTGGAAGAAGC
TAAATCAGTTGGTCAGCTCCGGAGCAAAAGGTTAGCAAATCTGCTTGGCTGTTGCTGCGA
AGGTGACGA

Homology of Contig U35_13342 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g26700.1	513	1e-73
Arabidopsis v10	None