barSeed - Barley Seed Development Database

Probe CUST_34230_PI390587928

Source Contig U35_13348

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34230_PI390587928	Hv_44K_v2	TCAGGATCAGTAATGATACTGTCAAAGGGAAGCTTAACCTCATCGACTTGGCTGGAAATG	695	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68992.2	2409	2e-24	1462 - 1521	100	60 / 60	minus	ABC24103
MLOC	MLOC_68992.1	2384	2e-24	1484 - 1543	100	60 / 60	minus	ABC24103
MLOC	MLOC_68992.3	2315	2e-24	1376 - 1435	100	60 / 60	minus	ABC24103
JLOC1	JLOC1_45698.1	2351	8e-25	889 - 948	100	60 / 60	plus
Harvest21	ABC23581	755	3e-25	696 - 755	100	60 / 60	plus
Harvest35	U35_13348	755	3e-25	696 - 755	100	60 / 60	plus

Contig Sequence (755 bp)

>U35_13348 755 Hv_44K_v2
TACTCCCCCGCCTCTCCCGTGTACCGCGGTCGACCTCTCCCCAATGGCGAGCGCCGCCTC
CTCTTCCTCCTCGCAGTCAGTGCGTGTCGTGCTGCGGGTGCGTCCGCTTCTCCCGTCGGA
GGCCAGCTCGGCGGCGGCCCCCTGCGTCTCCCTCATCGGCCGCCACCCCGGCGGCGAGGT
CACTATCCAGCTCAAGGATCAGCACACCAGCCGGAACGAGTGCTACAAGGTGGACGCCTA
CTTCGGCCAAGAGGAAAGGGTTTCCGACGTATTTGACCAGGAGCTCAGCGCCGTGATCCC
GGGCATCTTTGAGGGCACCAACGCGACCGTGTTTGCCTATGGGGCAACCGGCAGCGGCAA
GACCTACACGATGCAGGGCAGCGAGGATGTGCCGGGGCTCATCCCTTTGTCGGTTGCGAC
CATCCTGGCGCGCTGCACCGGCACGTGGTGCTCCGTGGAGATCTCCTATTACGAGGTGTA
CCTCGAACGGTGCTATGACTTGCTCGAGCCCAAGGCAAAGGAGATCATGGCTTTCGACGA
CAAACTTGGCAACCTACAGCTCAAGGGCTTGGCTTGGGTCCCTGTGCGATCAATGGAGGA
ATTTCAGGAGGTCTACTCGATAGGTGTGCAGAGGAGAAAAGCCGCCCACATAGGCCTGAA
TGATGTCTCAAGTAGGAGCCATGCTGTGCTCTCTATCAGGATCAGTAATGATACTGTCAA
AGGGAAGCTTAACCTCATCGACTTGGCTGGAAATG

Homology of Contig U35_13348 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g38480.1	585	2e-122	protein\|kinesin motor domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g23290.1	587	1e-119
Arabidopsis v10	AT5G02370.1	628	2e-75	ATP binding microtubule motor family protein \| chr5:503444-506388 FORWARD LENGTH=628