barSeed - Barley Seed Development Database

Probe CUST_34222_PI390587928

Source Contig U35_25329

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34222_PI390587928	Hv_44K_v2	CATTGCAAAACATACACTGACTATCATATTGTAGTGAACTAGGATACTTCAGTTGACTTG	523	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65279.6	4273	2e-24	335 - 394	100	60 / 60	minus	None
MLOC	MLOC_65279.2	2731	2e-24	390 - 449	100	60 / 60	minus	None
MLOC	MLOC_65279.3	5604	2e-24	390 - 449	100	60 / 60	minus	None
MLOC	MLOC_65279.19	5087	2e-24	136 - 195	100	60 / 60	minus	None
MLOC	MLOC_65279.10	2870	2e-24	329 - 388	100	60 / 60	minus	None
MLOC	MLOC_65279.11	1445	2e-24	187 - 246	100	60 / 60	minus	None
MLOC	MLOC_65279.13	2026	2e-24	185 - 244	100	60 / 60	minus	None
MLOC	MLOC_65279.14	2058	2e-24	185 - 244	100	60 / 60	minus	None
MLOC	MLOC_65279.15	2309	2e-24	185 - 244	100	60 / 60	minus	None
MLOC	MLOC_65279.16	4895	2e-24	146 - 205	100	60 / 60	minus	None
MLOC	MLOC_65279.1	2026	2e-24	390 - 449	100	60 / 60	minus	None
MLOC	MLOC_65279.8	2049	2e-24	329 - 388	100	60 / 60	minus	None
JLOC1	JLOC1_42949.6	3870	8e-25	2092 - 2151	100	60 / 60	plus
JLOC1	JLOC1_42949.3	5441	8e-25	3663 - 3722	100	60 / 60	plus
JLOC1	JLOC1_42949.2	2891	8e-25	1113 - 1172	100	60 / 60	plus
Harvest21	ABC23416	608	3e-25	524 - 583	100	60 / 60	plus
Harvest35	U35_25329	608	3e-25	524 - 583	100	60 / 60	plus

Contig Sequence (608 bp)

>U35_25329 608 Hv_44K_v2
CAGTGACCCTTGTATCACATCCTTGCTTAAGACTTTAAGCCCTGTTCTTCTCCGATTCCA
TTCTCCGAAGAAACAAGCAGCTGATGCAAGTACAACACCATCAAATTATGCATATTTTCA
TGGGCAGAAAAACAGATCAAATTCTTTCAACGTGGATGAACTTTGCAGTGACAATTTACC
TTCTTCAGACACTACTCCAACCAAGTCAAGGATGCGCTGGACGCCTGAGCTCCATGAGAA
GTTTGTTGATGCCGTTGACAAGCTTGGTGGAAGTGAAAAAGCAACTCCAAAAGCAGTCCA
GAAAGTTATGAAGGTTGAAGGGCTAACTATATACCATGTAAAAAGCCATCTACAGGTCTA
CATTTGTTCCTTCTGAGTTTTCAGTGTTTAGTTTTAATTTCTTCTGTATTTTCCTGATGG
CCACGGGTTATTCTTTTGCAGAAGTATCGTACAGTTCGCCATCAATCTGAATCATCTGAT
GGTTTGTGTGTCTCTCTATGTTGCAACGCTGGTTTAATGTCATCATTGCAAAACATACAC
TGACTATCATATTGTAGTGAACTAGGATACTTCAGTTGACTTGTTACTTTACCATTACCA
TTGTTTAT

Homology of Contig U35_25329 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None