barSeed - Barley Seed Development Database

Probe CUST_34213_PI390587928

Source Contig U35_13350

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34213_PI390587928	Hv_44K_v2	GTCCTACGCCTACTACCTCTCCCGGTACCTCCACGCCTTGCGCGGCACGTTCGCGGTGCT	203	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372809	1203	7e-23	444 - 503	98	59 / 60	plus	ABC39503
Harvest21	ABC23492	347	3e-25	204 - 263	100	60 / 60	plus
Harvest35	U35_13350	348	3e-25	204 - 263	100	60 / 60	plus

Contig Sequence (348 bp)

>U35_13350 348 Hv_44K_v2
GGATCCCCCGGGCCTGCATGTGCGCGCAACAAGCTCCTCCTTTTCCTGCCTGCCGGCGAG
CGACCGATCCGGCGGACGAGACCATGGCGCTCGCCGGCGACGTCGCCTACTGGCTGGCGG
AGCACCCGGAGCCGGACGACGCCGCTCCGGTGGCTCCTCTGCTTCCCGCCGGGGACGCGC
TCGTCCGGCCGCGTCTTCTTCTGGTCCTACGCCTACTACCTCTCCCGGTACCTCCACGCC
TTGCGCGGCACGTTCGCGGTGCTCCGGCGCCGGCGCGGGGCCGGCGCCCGGGTGCTGGCG
CACGCAGCGTCGGTGGCCATGGCGTTCCTGTGGCTCGAGTTCTCGCAG

Homology of Contig U35_13350 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None