barSeed - Barley Seed Development Database

Probe CUST_34209_PI390587928

Source Contig U35_13353

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34209_PI390587928	Hv_44K_v2	GATCCAAAGAGGATGTTGCCTTCTCTCGGATATAAAGTTTCTCCTGTTGGGATCAAAAAA	471	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21703.1	1394	9e-22	168 - 222	100	55 / 55	minus	ABC12692
JLOC1	JLOC1_15056.1	1407	5e-22	1263 - 1317	100	55 / 55	plus
Harvest35	U35_13353	544	3e-25	472 - 531	100	60 / 60	plus

Contig Sequence (544 bp)

>U35_13353 544 Hv_44K_v2
GCAGGGCGGCCGCGTCAAGACGGACTGGACCAAGGCGCCCTTCGTCGCCGAGTACAGCAA
CATGGGGCTCAACGTCTGCGAGTGCTCGGGCGCCGACGCCGAGTGCGCCGCCGGCTGCAA
CGCGTCCACCGCGCCGGAGCCGTCCCAGCTCACCAAGGAGCAGATGCGCCAGCTCAGGGC
CGTGCAGCTCGGCTACACCATCTACGACTACTGCGCCTCCGCCAGGGAAGACGGCAAAGG
CCCCGTGCCGCCCGAGTGCGACATGGAACAGTACTGATGATAAAATCAAGGACTGCGCTA
TACGATGATCCATGATCAACACGATGCGCGCATGCATTCCTCCCATTTTGTTTCCTTGGA
TGTTGGAGGGGCGTCACCTCGGATCTCCTGATATGTTTATTCTTTTGCGTTGATTGTTTC
TTGCGAGATTACTACGTGCATTCTCTTCTGGCCTGATCGATGATGTATGATGATCCAAAG
AGGATGTTGCCTTCTCTCGGATATAAAGTTTCTCCTGTTGGGATCAAAAAAAAAAAAAAA
AAAA

Homology of Contig U35_13353 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None