barSeed - Barley Seed Development Database

Probe CUST_34202_PI390587928

Source Contig U35_25332

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34202_PI390587928	Hv_44K_v2	AAAGTTCACTGGAAGGGAAAAGGGTTTCTCTGAGCTACAGCGAATGGGCATTGGATTAGT	815	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4903.3	977	2e-24	324 - 383	100	60 / 60	plus	ABC23705
MLOC	MLOC_4903.1	1991	2e-24	1371 - 1430	100	60 / 60	plus	ABC23705
JLOC1	JLOC1_3108.4	2146	8e-25	1355 - 1414	100	60 / 60	plus
JLOC1	JLOC1_3108.3	2075	8e-25	1284 - 1343	100	60 / 60	plus
JLOC1	JLOC1_3108.2	2150	8e-25	1359 - 1418	100	60 / 60	plus
JLOC1	JLOC1_3108.1	2038	8e-25	1247 - 1306	100	60 / 60	plus
Harvest21	ABC23444	1037	3e-25	816 - 875	100	60 / 60	plus
Harvest35	U35_25332	1037	3e-25	816 - 875	100	60 / 60	plus

Contig Sequence (1037 bp)

>U35_25332 1037 Hv_44K_v2
GGTTGTTTTCTCGTCGATTTATTTCATTGGTCTGGCTGGTTTAACGCTTTCAGCATCACT
TCCAGCACTTCAACCACCTTCATGTTCAGGATCTGTTTGCCCAGAACCAAGCCTACTTCA
GAATGGCACATTTTTCCTGGGCCTCTATATGATTGCCCTAGGAACCGGAGGCATTAAACC
TTGTGTGTCATCCTTTGGAGCTGACCAATTTGATGTCAGTGATCCGACAGAGAGAGTAAA
GCAGGGTTCCTTCTTCAATTGGTTCTATTTCTGCATAAATGTCGGTGCACTCTTATCAGG
CACTGTTATTGTTTGGATACAAGATAACTCAGATTTCAGAAACCCGGTGGGAGTCCAATT
ACAAGAGTGTGCCAGGTTGTTGTTGCAGCATTCCGTAAGTGGCATATCGAGTTGCCACTC
GACGCTTCTCTTCTGTATGAAGTTGATGGTCGAAAGTCAGCAATAGAGGGAAGCCGAAAG
CTGGAGCACACAAGTGAACTTGAATTCCTTGACAAGGCTGCTATCATCTCATCTACTGAT
GCCAAGAGTGACTTTTCTGCAAACCCATGGAGGCTATGCACTGTCACCCAAGTGGAAGAA
CTGAAGATCCTAGTAAGAATGTTCCCAGTTTGGGCGACTACAATCATATTCAGCGGGGTA
TTTGCTCAGAACTCCGTATTCGTGGAGCAGGGAATGGTTCTTGACAAACGGGTTGGATCT
TTCGATATTCCTCCTGCATCCCTATTAACTTTCGACGTAATCAGTGTCATGATCTGGATT
CCAATTTATGACCGTATACTCATACCCATAGCTAGAAAGTTCACTGGAAGGGAAAAGGGT
TTCTCTGAGCTACAGCGAATGGGCATTGGATTAGTCCTATCCATTATGACAATGGTATCT
GCAGCTCTTGTTGAGTTGAAGCGCTTAGAGATTGCCAGGACTGAGGGTCTTGTTCATGAG
AATGTTGCTGTTCCGATGAGCATTCTTTGGCAAATACCACAGTATTGCTTTGCTGGTGCT
GCCGAGGTTTTCACCGC

Homology of Contig U35_25332 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g13240.1	592	4e-160	protein\|peptide transporter, putative, expressed
Brachypodium v1_2	Bradi1g68860.2	589	5e-170
Arabidopsis v10	AT2G02040.1	585	5e-122	\| Symbols: ATPTR2-B, NTR1, PTR2-B, PTR2, ATPTR2 \| peptide transporter 2 \| chr2:487542-489707 FORWARD LENGTH=585