barSeed - Barley Seed Development Database

Probe CUST_34200_PI390587928

Source Contig U35_25334

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34200_PI390587928	Hv_44K_v2	TGTTCTGTTTATAGTTGCTGAGCAATACACATCATCCACTGAGTTGGACCTCATCCCACC	577	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.818	0.930	1.993	2.170	0.743	0.522
Raw	11.356	19.920	38.742	64.179	7.669	5.619

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251438.1	1924	7e-23	658 - 717	98	59 / 60	plus	None
MLOC	MLOC_57698.1	4218	7e-23	625 - 684	98	59 / 60	plus	None
JLOC1	JLOC1_37428.2	4939	4e-23	615 - 674	98	59 / 60	plus
JLOC1	JLOC1_37428.1	4957	4e-23	629 - 688	98	59 / 60	plus
Harvest21	ABC25743	637	3e-25	578 - 637	100	60 / 60	plus
Harvest35	U35_25334	637	3e-25	578 - 637	100	60 / 60	plus

Contig Sequence (637 bp)

>U35_25334 637 Hv_44K_v2
CCGACGCCCTCGCCGCCCTCACCGACTCCGCCGCCGCCGACGATGTCGGGACCAGCAGCT
CTGCGGCCGGCGGCACATCCGCATCCAATCCCATCTCCCCGCGCTCCAGCAACCCTCTAC
CCTCCACCACCTCCGCCACAACCCCCCTCGAGCTTCCCGGCGTGACCTCCGCCGCGGCGT
CACGGAACCCTAGGATCCACCACACCCGCGGTATCCTCCACCTCTACCGATCCTCCCCCG
CTTCGTCCTACGCCTCCGCCGTAGCCACCACCGCCACCCCCTCTTCCTCCTCCTCCGGGC
CCGCCGCCCCACCGCTCCCATGCGACTCTCTGCTCCCGTCATGGCGCGGCACGCGCCTCC
TGGTGCTCGCCGTCCCAACCCGCGTCACGCCGGACGACTTCGTCCGCTTCTGCGGCCCCT
ACGTCGAGCACGCCTCTGAGATCCGTGTCATCAGCGACGATGGGGTGGAGGACCGGTACA
GCGTGCTTGTTGAGTTTGATGATCAGAAGAGCGCTGACGGATTCTATCTGGACCTGAATG
GCTGGAGGTTCTCGTCGTCAGAGGTAGAGGAGAGCCATGTTCTGTTTATAGTTGCTGAGC
AATACACATCATCCACTGAGTTGGACCTCATCCCACC

Homology of Contig U35_25334 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g55480.2	545	1e-59	protein\|BRCA1-associated protein, putative, expressed
Brachypodium v1_2	Bradi5g23970.1	551	8e-71
Arabidopsis v10	None