barSeed - Barley Seed Development Database

Probe CUST_34199_PI390587928

Source Contig U35_25336

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34199_PI390587928	Hv_44K_v2	TTCGAGATGGATCCTGGGCGGCGCATGCTGATCAACCATGAGGTGCTGGCGTTCGGTGAC	309	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK377023	1739	2e-24	689 - 748	100	60 / 60	plus	None
MLOC	MLOC_50459.3	1125	2e-24	405 - 464	100	60 / 60	plus	None
MLOC	MLOC_50459.2	1142	2e-24	405 - 464	100	60 / 60	plus	None
MLOC	MLOC_50459.1	1447	2e-24	413 - 472	100	60 / 60	plus	None
JLOC1	JLOC1_32197.1	1488	8e-25	414 - 473	100	60 / 60	plus
Harvest21	ABC23279	386	3e-25	310 - 369	100	60 / 60	plus
Harvest35	U35_25336	387	3e-25	310 - 369	100	60 / 60	plus

Contig Sequence (387 bp)

>U35_25336 387 Hv_44K_v2
CGCCACCGCCCCATGTCGCTACACGAGCTCGCCGCGGCCCGCGACGGCGTGGAACCGGAC
TCCAAACTCTTCGTCTGCAACCCTATCAGCGGCCAGCTGGTCCGCCTCCCGTCCCCCGGC
ATGGATGTGCCCAAGATGGGCACCTCTTTCGGCCTGCTCACCCAATCCCGGGGCTCCGAC
GGCCCGCCTGACAGGTACGCGGTGGCTCAGCTCAGCAAAAGCAGTCGCGGGGGAGGGGAT
TGCCGCAGGGTCGTTCGCCGGTTCCTGTCGGAGACAGGGGAGTGGGACGAGCGGCCGCTG
GTCGGGGCGTTCGAGATGGATCCTGGGCGGCGCATGCTGATCAACCATGAGGTGCTGGCG
TTCGGTGACCGGCTGTGGTGGGTGGAC

Homology of Contig U35_25336 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None