- Probe CUST_34197_PI390587928
- Source Contig U35_25339
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34197_PI390587928 | Hv_44K_v2 | TTAGGATCTCGATCTATTGCTGTGTGTAGCCATTTGAATGAGTACCTCATTGTGTTTTTT | 287 | GeneList: darkmagenta MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.404 | 2.997 | 1.074 | 0.769 | 0.462 | 0.513 |
| Raw | 71.461 | 80.128 | 23.749 | 28.491 | 4.869 | 6.201 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_64938.1 | 2550 | 2e-24 | 2373 - 2432 | 100 | 60 / 60 | plus | ABC42269 |
| JLOC1 | JLOC1_42680.1 | 2477 | 8e-25 | 2206 - 2265 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_25339 | 427 | 3e-25 | 288 - 347 | 100 | 60 / 60 | plus |
Contig Sequence (427 bp)
>U35_25339 427 Hv_44K_v2 GACGGGACGGCGTCGGCGGCCGAGCGCTGGGTCGACATTGCTGCGATGTGAGCATGATGA TGCAGATTTTTTTGGGAATCCCAGATCCGTGGGAAATTTCGAGCAGGTTAGCAGAGTTTT TGATAGTTGGATTAATCCAGTGCACCACGTTTATCCCCAGTATATTCCTGTTGTTCTTGT ATACTGTACCGTATACTGTAGTTTGTGTGAAGTGGATGATGTAGTACGCGTTCGTGGCCC CTCAAAAAAAAAAGTACGCGTTCGTGTCAACGCTTAGCGGCCGCAGTTTAGGATCTCGAT CTATTGCTGTGTGTAGCCATTTGAATGAGTACCTCATTGTGTTTTTTTCTAAATAAAACG TGGAGTCAAGATTATAGTATTATGCTTATGAATAAAGCTGGAGATGGTGATAAAAAAAAA AAAAAAA
Homology of Contig U35_25339 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |