barSeed - Barley Seed Development Database

Probe CUST_34195_PI390587928

Source Contig U35_37313

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34195_PI390587928	Hv_44K_v2	CGATGATGAAGTTTGTTGCCTTCTGTGTATGTTATCTTGTCCTTAGCTGATGATAATTTT	23	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.355	0.591	1.307	1.926	1.030	1.193
Raw	4636.007	11900.190	23468.400	53219.633	10179.983	12689.237

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70501.1	2121	6e-24	1998 - 2056	100	59 / 59	plus	ABC01808 ABC33098
JLOC1	JLOC1_46788.1	2229	3e-24	2077 - 2135	100	59 / 59	plus
Harvest21	ABC33098	497	3e-25	24 - 83	100	60 / 60	minus	ABC33098
Harvest21	ABC01808	2362	3e-25	2267 - 2326	100	60 / 60	plus	ABC01808
Harvest35	U35_37313	497	3e-25	24 - 83	100	60 / 60	minus
Harvest35	U35_14589	2362	3e-25	2267 - 2326	100	60 / 60	plus

Contig Sequence (497 bp)

>U35_37313 497 Hv_44K_v2
TTTTTTTTTTTTTTTTTGATCAAAAAATTATCATCAGCTAAGGACAAGATAACATACACA
GAAGGCAACAAACTTCATCATCGCTAAGGCTAAAGAGACACCAGTTGGTTTCTGATTTCA
GCTGTAACACCCACCGAGAGAGGCTGCCGACTGAGTGGTGCTTTGCTGTCAACCATCCTG
CAGCACCTCCCTTCCTTATTCCCCAAAACTGTAACTGTCATCCACCCGAAGCTGCCGCGG
CAGCGCTGCGACTGTCGTCTACTCTCGAACCGGCGAACCAAGCAAGCAAGCGCATTGCGA
CTCTACTGTAGCAGGACAACGCAATGTACAGGGGTATCCTCCTTCCGGGCCGCGGAAGGA
TGAGGAACATGTCTTCAGAGCTCAAGGAGACCTGAGTCAAAGAAAGAAGAGAAGGTCGTG
GAGAAGGAAGAGAGCGACGATGACATGGGCTTCAGTCTGTTCGACTAGATGCTTGGGTAT
CTTGTGTCTGCAGTATC

Homology of Contig U35_37313 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None