barSeed - Barley Seed Development Database

Probe CUST_34193_PI390587928

Source Contig U35_37315

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34193_PI390587928	Hv_44K_v2	ATAAAGGGAACCCATCTGATCATACCAAGGATTGTGATCCGGGAGCTGGAATGCATGAAA	142	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.226	1.452	1.825	0.919	0.234	0.195
Raw	95.032	172.719	188.476	159.366	13.907	12.585

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69909.3	3080	2e-24	548 - 607	100	60 / 60	minus	None
MLOC	MLOC_69909.2	2965	2e-24	677 - 736	100	60 / 60	minus	None
MLOC	MLOC_69909.1	3798	2e-24	1023 - 1082	100	60 / 60	minus	None
JLOC1	JLOC1_46355.1	3790	8e-25	2651 - 2710	100	60 / 60	plus
Harvest21	ABC33100	619	3e-25	143 - 202	100	60 / 60	plus
Harvest35	U35_37315	619	3e-25	143 - 202	100	60 / 60	plus

Contig Sequence (619 bp)

>U35_37315 619 Hv_44K_v2
GGGAAGATGAACTGAACAGCCTTACAAACAAAAAACGTGAATCCATAGGGTTGGAGAAGT
GGTGAAAGTCTGGACCATGGTGGCTGATACAGATTGTCTTCTTGATGACGAATCAAGGAA
GTCTATAATGCTACTAAAAGGCATAAAGGGAACCCATCTGATCATACCAAGGATTGTGAT
CCGGGAGCTGGAATGCATGAAACAGCGGGAGGGCATGTTCAAGAGGTCATCAAAGGCCAC
CTCCATAATCCAATGGATCGAGGATTGCGTGGAGAACGAGAGCTGGTGGATTCATGTGCA
GAGTTCATCCGAGATGTTGCCAGTAGCACCAACCCCACCTGCAACTCCTACAGAAACGCA
ACGCTACAGTGAAGAAAGTGAAGCCACTGCTGCTGCCGGCGCCTTCAACTCAATGCTGTC
CCTCTTCTCACCAAGGAGCTTTACTGGCATCTTCTCCCCAAGAAGCCTCACCGACATCGT
TTCCCCCAAGACCGAAGACCGTGTCCTCGACTGCGCCCTCCTCTTCAACAAGCTTAGAGG
CAGCAGCCAGAACATGGTCATNCTGTCCAACAGCGTCAACCTCAAGATCAAAGCCATGTC
AGAGGGCTTGCTGTGCGAG

Homology of Contig U35_37315 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g24400.1	1151	8e-77
Arabidopsis v10	None