barSeed - Barley Seed Development Database

Probe CUST_34192_PI390587928

Source Contig U35_37316

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34192_PI390587928	Hv_44K_v2	TGAGTGCATGCACCTTTTTATTGCTAATTAATCTGTTTGGCGCAGCTCTCCGGTCTCCTT	82	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81761.1	1377	2e-24	1257 - 1316	100	60 / 60	minus	ABC00216 ABC00231 ABC26710 ABC32010 ABC32343 ABC32779 ABC32916 ABC33104
JLOC1	JLOC1_54387.1	1373	8e-25	1257 - 1316	100	60 / 60	minus
Harvest21	ABC33104	395	3e-25	83 - 142	100	60 / 60	plus	ABC33104
Harvest35	U35_37316	395	3e-25	83 - 142	100	60 / 60	plus

Contig Sequence (395 bp)

>U35_37316 395 Hv_44K_v2
GTTCAGATCTTTACTCCCTTAGCTCGGGTTTATTAGGACAAAGAGAGAAAACTCAATTAC
CAATATATATTTTTTGGGGAAATGAGTGCATGCACCTTTTTATTGCTAATTAATCTGTTT
GGCGCAGCTCTCCGGTCTCCTTGGCCTCGTGTTGGTGTTTGGAGTGAGACTGCATGGATG
GTGGCGCAACTACGCTAGCGTATGGTGTTAAGTGGTGGTTTGGCTGGTCGGCTCCGGTTG
GGCTCCGGCAGCAGCGTCGTTGACGTCGCATCCCTTCTTGGAGGTGCTGCTTGGCACGCA
TCGGATCGAAGCCTCGGGCTGTGGTGGTTTATCTCCGGAAGGCGCAACGATGGCGGATCT
TCCGCTCTTTTTCGAGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_37316 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None