- Probe CUST_34190_PI390587928
- Source Contig U35_37318
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34190_PI390587928 | Hv_44K_v2 | TGTGTTGCCTGCCTATGCCTAGTAGTGGAGTAAAGTGTGGGTCTTGTATAGTTTAAGTGG | 29 | GeneList: purple MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.143 | 0.298 | 0.953 | 1.804 | 1.150 | 1.435 |
| Raw | 184.452 | 614.613 | 1686.380 | 4973.063 | 1126.295 | 1512.605 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_59055.2 | 4324 | 3e-21 | 2871 - 2930 | 97 | 58 / 60 | minus | ABC14290 ABC26011 ABC33107 |
| MLOC | MLOC_59055.5 | 2175 | 3e-21 | 722 - 781 | 97 | 58 / 60 | minus | ABC14290 ABC33107 |
| JLOC1 | JLOC1_38404.1 | 4296 | 2e-21 | 1396 - 1455 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC33107 | 222 | 3e-25 | 30 - 89 | 100 | 60 / 60 | minus | ABC33107 |
| Harvest35 | U35_37318 | 222 | 3e-25 | 30 - 89 | 100 | 60 / 60 | minus |
Contig Sequence (222 bp)
>U35_37318 222 Hv_44K_v2 TTTTTTTTTTTTTTTTTAAAAAAAAAGGGCCACTTAAACTATACAAGACCCACACTTTAC TCCACTACTAGGCATAGGCAGGCAACACATGGGAGGCCAACATCTTTAACTATGTTATGC ACAACAACAAAACTGCCCACTTTTTAAATTTCGCGCAAACTAAAAAAAGGAAGGGTTTTA CAAGGGCAGGTAGGCCCTGATCATTGCTGAACCAGGGGGGCC
Homology of Contig U35_37318 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |