barSeed - Barley Seed Development Database

Probe CUST_34186_PI390587928

Source Contig U35_13364

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34186_PI390587928	Hv_44K_v2	TAGGGTTGGTTTGTCATACTGGGATATTATTTGGACTACACATAAGATGTGTAAAGTTGA	564	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20334.1	1500	2e-24	411 - 470	100	60 / 60	minus	ABC24714
MLOC	MLOC_20334.2	1268	2e-24	411 - 470	100	60 / 60	minus	ABC24714
JLOC1	JLOC1_14090.6	1224	8e-25	1029 - 1088	100	60 / 60	plus
JLOC1	JLOC1_14090.5	984	8e-25	789 - 848	100	60 / 60	plus
JLOC1	JLOC1_14090.4	912	8e-25	717 - 776	100	60 / 60	plus
Harvest21	ABC24714	650	3e-25	27 - 86	100	60 / 60	minus	ABC24714
Harvest35	U35_13364	650	3e-25	565 - 624	100	60 / 60	plus

Contig Sequence (650 bp)

>U35_13364 650 Hv_44K_v2
CGGTTCATTACAGGGAAGACATTTGTGGGAGAAGATATATGCGCGGATTCTATAATGATG
TTGCTAGTCTACAGGATCTGCGGAAAAAGTTTCCTCATTGCAGCACAGATATGGAGCCAG
GACAGAGTTTGCAAAGGAGCTTTACTTTCAGGGCATGGTATCCCGGTGATGGTGGACAAG
ACCCCTACATGGGCACAATGTCTTTCATGCTACCGCTGGCCTCAGCAAGTTGCTGGTCTA
CCAGTGCCTCGTTGAGGATGTCAAGATGGACATTGACATGGTCGACCCCACTTAGGTTTC
TGCTTATGATGGTTGGAGAGATAACTTGCAGCTACTGTCGATGAAAATGTCATTAGAGTT
GTGCCTCTTGTAAATAGAGAACATATATGGGATTGCTGATCTTTTCTCTGTTCCTGTTTG
TTGTGTGCAATTTTCTTTGCTCCTGTTTGTTCTGTGTGTGGCGTGCTATCGTGGATGGCA
CTCTTTTCACTGAATTTGTGTTAGTTGTGTAATGTGAAATCGTTGGTAATTTGTTCCGGA
TATGAGCAGCTACGTACGTACTAGTAGGGTTGGTTTGTCATACTGGGATATTATTTGGAC
TACACATAAGATGTGTAAAGTTGAATGATGAATGTGCTTTCAATCATCGC

Homology of Contig U35_13364 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None