barSeed - Barley Seed Development Database

Probe CUST_34184_PI390587928

Source Contig U35_13366

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34184_PI390587928	Hv_44K_v2	TTGGAGCATCTGGGAAACATCATTCAGATGTGGAAGATGTTGGCTCCAAGTACGGAATGA	272	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366160	1880	2e-24	906 - 965	100	60 / 60	plus	ABC40815
MLOC	MLOC_11243.1	4190	2e-24	667 - 726	100	60 / 60	plus	ABC09037 ABC40815
MLOC	MLOC_11243.5	1406	2e-24	468 - 527	100	60 / 60	plus	ABC40815
MLOC	MLOC_11243.3	1590	2e-24	668 - 727	100	60 / 60	plus	ABC40815
MLOC	MLOC_11243.4	1573	2e-24	635 - 694	100	60 / 60	plus	ABC40815
MLOC	MLOC_11243.2	4267	2e-24	754 - 813	100	60 / 60	plus	ABC09037 ABC40815
JLOC1	JLOC1_7431.5	2080	8e-25	607 - 666	100	60 / 60	plus
JLOC1	JLOC1_7432.3	2968	8e-25	1886 - 1945	100	60 / 60	minus
JLOC1	JLOC1_7432.2	3343	8e-25	2261 - 2320	100	60 / 60	minus
JLOC1	JLOC1_7432.1	2852	8e-25	1770 - 1829	100	60 / 60	minus
JLOC1	JLOC1_7431.4	2109	8e-25	636 - 695	100	60 / 60	plus
JLOC1	JLOC1_7431.3	2116	8e-25	643 - 702	100	60 / 60	plus
JLOC1	JLOC1_7431.2	2146	8e-25	673 - 732	100	60 / 60	plus
JLOC1	JLOC1_7431.1	2139	8e-25	666 - 725	100	60 / 60	plus
Harvest21	ABC23151	586	3e-25	273 - 332	100	60 / 60	plus
Harvest35	U35_13366	588	3e-25	273 - 332	100	60 / 60	plus

Contig Sequence (588 bp)

>U35_13366 588 Hv_44K_v2
GCTGCAGAATCGCCGAGGATGGAAATGGGTTCCTGATAACCACAGGCCACTGTATTCTGG
CGCCAGATGTAAAAGATGGCTCTCTGAGAGCTGGAACTGCAGATTGACACAACGCACAGA
CTTCGCTTACGAGAAATTTAGATGGCAACCTGAAGGCTGCAATATGCCAGTGTTTGAAGC
TGCCCAATTCTTGACAAGAATGCAGGATAAAACCATTGCTTATGTAGGCGACTCCTTAGG
GAGGCAGATGTTCCAGTCGATGATGTGTATGCTTGGAGCATCTGGGAAACATCATTCAGA
TGTGGAAGATGTTGGCTCCAAGTACGGAATGACCCAGGCACATCGTGCAAAACGACCAAC
ACGGCCCGTAGGCTCGGCCTACCGATTCCGGAGCACAAACACGACCGTCCTGTATTACTG
GTCATCGACGCTCTGCGATCTGGAGCCTCTCAGGCGATCAAATCCAGCTGCCGGTTACGC
CATGCACCTTGATCGCCCGCCTTCGTTTCTCAAGAAGAACCTTCACAGGTTCCACGTCCT
GGTTCTGAACACCGGGCATCACTGGAACAGGGGTAAGCTGAAGGCGAA

Homology of Contig U35_13366 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g36750.2	455	2e-104	protein\|expressed protein
Brachypodium v1_2	Bradi4g05130.2	446	1e-116
Arabidopsis v10	AT5G20680.1	551	5e-80	\| Symbols: TBL16 \| TRICHOME BIREFRINGENCE-LIKE 16 \| chr5:6998946-7001596 FORWARD LENGTH=551