- Probe CUST_34179_PI390587928
- Source Contig U35_25341
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34179_PI390587928 | Hv_44K_v2 | ACTCCAACATCGTCCTCTTCGTGCAGCGAGGGGATGTGAAGGTTGGATGGATCCACAAGG | 203 | GeneList: plum1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.123 | 0.282 | 0.564 | 2.169 | 2.014 | 2.857 |
| Raw | 2.939 | 17.425 | 31.919 | 186.145 | 64.055 | 97.781 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_57363.1 | 1900 | 2e-24 | 482 - 541 | 100 | 60 / 60 | plus | ABC08085 |
| JLOC1 | JLOC1_37165.1 | 1921 | 8e-25 | 492 - 551 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC24037 | 276 | 3e-25 | 204 - 263 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_25341 | 277 | 3e-25 | 204 - 263 | 100 | 60 / 60 | plus |
Contig Sequence (277 bp)
>U35_25341 277 Hv_44K_v2 GGACAAGGTGGAGAAGCTGGTGGAGTCGGAAGGTGGGAGCGTGCACGTCGTGCGGGGGGT GCCAGGTTCCGGCGTGCCGGAGTTACCGTGGCAGCACGGCCACGGCGGGTGGTCAGCGGG GTGCGGAGCTTGCCGAGAGGGGCTCATGCACATCGGCTTCATAACCATGGAGCCCAAGAC GCTGTTCGTGCCGCAGTACATAGACTCCAACATCGTCCTCTTCGTGCAGCGAGGGGATGT GAAGGTTGGATGGATCCACAAGGGCGGTCTGGTGGAG
Homology of Contig U35_25341 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |