- Probe CUST_34177_PI390587928
- Source Contig U35_25344
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_34177_PI390587928 | Hv_44K_v2 | TGTGTCCTTCTGCTCCATTTTATTTGTGAAAAGCTAGAAATTTGTATGAGCCAATCATCA | 468 | GeneList: white MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.084 | 1.407 | 1.518 | 1.200 | 0.312 | 0.260 |
Raw | 252.133 | 519.476 | 484.888 | 609.039 | 55.457 | 49.906 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_47482.1 | 2299 | 2e-24 | 630 - 689 | 100 | 60 / 60 | minus | ABC07298 ABC23542 |
JLOC1 | JLOC1_30610.1 | 2322 | 8e-25 | 1574 - 1633 | 100 | 60 / 60 | plus | |
Harvest21 | ABC23542 | 566 | 3e-25 | 469 - 528 | 100 | 60 / 60 | plus | ABC23542 |
Harvest35 | U35_25344 | 566 | 3e-25 | 469 - 528 | 100 | 60 / 60 | plus |
Contig Sequence (566 bp)
>U35_25344 566 Hv_44K_v2 GGGAAGGTGTTGGAGGCCAGGAAGAAGAAGGACGCTGCTCCGGGGACCAATGCGGCTTAC TTGGGTGGGTTTGCGATGCCCAATGACCCACCTGAGCAGCTCAAGCATAGGGGATACCAT ATGGTTGCAGGTGCAGTGGACATTGGGTTGTTCCGGAAGGCGGCATTGGAGGATGTCAAG CGGTTCAAGGAGGCGTCAATGGAGATTGGTGAAGCAGAGGGCGAGGAGGAGGATGAGAAG GAAGATGGATACTGGAGTGAATGAGCACTGGGGAACTGGTGGTGGTTTCGTTTGTCTGTG TTCTGAACTGAAACTTTTAGGGCCTCCATTTTCTGGATTTTGGTGTACTCTTGTTTAGTC GATGATTTGGTTTTTAGGAGGCAATCTGTTTGGGCACCTTACTGTTCCCATTCGTAGGTG GTAATTGGTGAGTACCTAATAAAGAGTTGGATTTTAGTGAAATGCTGCTGTGTCCTTCTG CTCCATTTTATTTGTGAAAAGCTAGAAATTTGTATGAGCCAATCATCAGAAATTACTTCA TGGCAAGAGAAAAAAAAAAAAAAAAA
Homology of Contig U35_25344 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |