- Probe CUST_34175_PI390587928
- Source Contig U35_25346
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34175_PI390587928 | Hv_44K_v2 | GTGGGCTAGAATCTGTTGTTGTTTTAGAAACTGTGCCTTTTTTGTTTTGTTTGAGATCAT | 291 | GeneList: sienna3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 11.350 | 7.147 | 1.541 | 0.475 | 0.188 | 0.216 |
| Raw | 424.557 | 404.709 | 77.492 | 39.559 | 3.145 | 5.170 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_63989.2 | 1436 | 2e-24 | 12 - 71 | 100 | 60 / 60 | minus | ABC41366 |
| MLOC | MLOC_63989.1 | 1930 | 2e-24 | 122 - 181 | 100 | 60 / 60 | minus | ABC41366 |
| JLOC1 | JLOC1_41971.1 | 1900 | 8e-25 | 1663 - 1722 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC41366 | 271 | 5e-23 | 29 - 87 | 98 | 58 / 59 | minus | ABC41366 |
| Harvest35 | U35_25346 | 380 | 3e-25 | 292 - 351 | 100 | 60 / 60 | plus |
Contig Sequence (380 bp)
>U35_25346 380 Hv_44K_v2 GAAGGAGAAGAGCAAGAACTGATCACCCCGATCCACCAGCGGAACCCAAGGTATCAAGAT TTTTTTCGGCTTCGGCAATAATTCATTTCGTGGAGCTGCTGCCTCAGGAGTGTATGGGCC GGATCATCATCAATCATTCGTCCAAGTCTGCTTCGTCCGGCATGAACCCTGCTGCCATTT ATTCAGGCAACCATGTGCTGCTTTTTTTTTCTTCTCCTCTGTGATGAGGCCGGTGTACAA GTTTTGTGGGAGTTTTATTAGACAAAGACTGGCAAGCGCTAGCCCTGCTATGTGGGCTAG AATCTGTTGTTGTTTTAGAAACTGTGCCTTTTTTGTTTTGTTTGAGATCATTAAAAAAAA AAAAAACCTGCAGCCCGGGG
Homology of Contig U35_25346 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |