barSeed - Barley Seed Development Database

Probe CUST_34173_PI390587928

Source Contig U35_37321

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34173_PI390587928	Hv_44K_v2	TTGAACCCTGATGGTGAGAAAAACAAAACTTTTCTGTACAAGTCCATGTGACGATGAGCA	307	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.129	1.167	1.036	1.037	0.509	0.618
Raw	199.586	169.413	135.728	221.314	36.593	48.381

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70937.5	1237	2e-24	839 - 898	100	60 / 60	plus	ABC33113
MLOC	MLOC_70937.1	1302	2e-24	947 - 1006	100	60 / 60	plus	ABC33113
MLOC	MLOC_70937.2	1332	2e-24	977 - 1036	100	60 / 60	plus	ABC33113
JLOC1	JLOC1_47103.4	1188	8e-25	794 - 853	100	60 / 60	plus
JLOC1	JLOC1_47103.3	1256	8e-25	862 - 921	100	60 / 60	plus
JLOC1	JLOC1_47103.2	1230	8e-25	836 - 895	100	60 / 60	plus
Harvest21	ABC33113	388	3e-25	308 - 367	100	60 / 60	plus	ABC33113
Harvest35	U35_37321	388	3e-25	308 - 367	100	60 / 60	plus

Contig Sequence (388 bp)

>U35_37321 388 Hv_44K_v2
GCCTCTTTCGCGCACCGCGGCGCCGCCATGGACGGCGGCTCCTCGGAGGGCGACTCCTCG
GGCACGCTGCGCTCCTCCGATGCCGCCGGCCGCGCCGCCGCTGGACAGAAGCGCGTCCGG
CCAGGCTAGCTTGGCCCGACCAGATGGTGCCTGCTGTTTCCTAGCATCGTCATGGATGCT
GTGTAGCAGCTAGCGAGGAAGGATGTAAGTTACTGATGAGATGTTTGCTACTCCTACTTA
CTACTAGACTAGTTCTTCCTTGCTTAATTTCTTGCCGTGCTTCTTCTTCTTTGCCTCAAA
GTGTTTCTTGAACCCTGATGGTGAGAAAAACAAAACTTTTCTGTACAAGTCCATGTGACG
ATGAGCANAANAAAAAAAAAAAAAAAAA

Homology of Contig U35_37321 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None