- Probe CUST_34172_PI390587928
- Source Contig U35_37324
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34172_PI390587928 | Hv_44K_v2 | TTGGATGTCTTTATGTACCTTTCTTTCTTTTGATCGAAATGGAGGTTTCAACCATGTGCC | 401 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.061 | 0.173 | 1.337 | 1.960 | 1.106 | 0.986 |
| Raw | 277.266 | 1187.565 | 8287.207 | 18348.030 | 3784.670 | 3633.750 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_3919.1 | 1663 | 8e-25 | 1598 - 1657 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC33117 | 461 | 3e-25 | 402 - 461 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_37324 | 461 | 3e-25 | 402 - 461 | 100 | 60 / 60 | plus |
Contig Sequence (461 bp)
>U35_37324 461 Hv_44K_v2 GGCCACGCCGAGCAGGACGGCGGCAGTGGTGGCAACAAACCGGAGGGAGAGCTCAAAGAT GATGACATTGGCACGCTGCTGGACATGATTATACCAGCGACCTTCCCGATGACGGAGCCC GCACCACCAGGCGTCGTGCCCGACAACTCTGGCGGCTCGATCTCGCAGAATGGCAGCAAC GACCATGACCACCACAACGTCGACCTCAGTGTTGATCATATTCCGATCATCTCATCAGAG CAGGACTGGGTACTCGACGGGGCCTGCCAGTGGAACAACATGTCCGGAATCTGCTGACAA GATCGATCTACCGCACATCTTAATCAGGACTCGATGTGTTTTATGTATGGTGATCTTGAC AAGCAAAACCATTATGAGGGGTTTGTTTTGATGCAACCTTTTTGGATGTCTTTATGTACC TTTCTTTCTTTTGATCGAAATGGAGGTTTCAACCATGTGCC
Homology of Contig U35_37324 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |