barSeed - Barley Seed Development Database

Probe CUST_34159_PI390587928

Source Contig U35_9481

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34159_PI390587928	Hv_44K_v2	GAGAATTGATAACTGATGATATGATACCAGTATGTATGCATGCATGTCCTTGAGGGGAAA	580	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.948	2.200	1.052	0.672	0.336	0.272
Raw	68.727	77.272	33.033	34.285	4.933	3.085

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_24689.1	905	1e-22	742 - 800	98	58 / 59	plus
Harvest21	ABC20174	654	3e-25	581 - 640	100	60 / 60	plus	ABC20174
Harvest35	U35_9481	654	3e-25	581 - 640	100	60 / 60	plus

Contig Sequence (654 bp)

>U35_9481 654 Hv_44K_v2
TTCATTCTCAATCCAGCATATGATGTTTGGCAGGTTGAACACGTCTTGTCTCCAGATGGG
TCTGACCCTGAAAATTTGTGGCAAAATTGCAGATTAGATATTACTAAGTGTGATTCCAAA
CAGCTCAAAACTCTCCAAGGTTTCAGGAAAGAGTTGCTTGATGCTATAAGTGAATTCAAG
AAGAAAAAGGAGTGGGGCATGTTCATTAACTCCTGCTATATACACTGTCAATCAATGAAC
TCCTTGACTTGGCACTCTCCATCTGCCCCTAGAATTAACAACAAGACAATCGCTGAATCG
GTGGGAGAATGGTTCTTTGACCGGAGAGAAGTGAAGAAAATCGACTGTGAATACCCCTGC
AACCCGACATGCCACAACGCAGTCCTCGACCAACCTTACAAGGAAGAATGATAGACTTTT
TTCGCCAAGCATTTTGGTGATTTTCAGCCCAATTTGCGCTACGTGTGCTCAGAAATGCCA
ATAGTTACGTTTTTGTGTTTTGAGGGAACCCCGAGCTCAGATTTGATTCAAACATGTACT
CGAGAAGTGTTGAAATATAAAACTGTAGATTTAAGAGAGAGAGAATTGATAACTGATGAT
ATGATACCAGTATGTATGCATGCATGTCCTTGAGGGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_9481 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g74330.1	431	4e-82	protein\|pectinacetylesterase domain containing protein, expressed
Brachypodium v1_2	Bradi2g62410.1	442	3e-86
Arabidopsis v10	AT3G09410.1	427	7e-55	Pectinacetylesterase family protein \| chr3:2898243-2900984 REVERSE LENGTH=427