barSeed - Barley Seed Development Database

Probe CUST_34157_PI390587928

Source Contig U35_9483

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34157_PI390587928	Hv_44K_v2	CTAAAGTCGGTGAAAACCGAAGGAATAAATGTGGGTGCTGGGAACGAGGTTCGTAAAAAA	1232	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.534	1.324	1.129	0.727	0.284	0.276
Raw	90.912	67.588	54.734	52.406	6.933	7.792

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_15578.1	1907	5e-22	1823 - 1877	100	55 / 55	plus
Harvest21	ABC20783	1303	3e-25	1233 - 1292	100	60 / 60	plus	ABC20783
Harvest35	U35_9483	1303	3e-25	1233 - 1292	100	60 / 60	plus

Contig Sequence (1303 bp)

>U35_9483 1303 Hv_44K_v2
GCCGGCACCGGCTTCTGCGCCCGAAGAGACGCCCTCTACGGCGCCCGGCCGGCCAGCTCG
CAGGGTCAGTTCTCCGGCATGGAGGTCGGCGAGCTGAAGAGAAGGTTCGGCGTCTCCAAT
GGTCACATAGCGTCGCTGCGCCGGTCGGCCGGGAACGGGAGCACGACGGTTGCGCGTGAT
GTTCTCCCACAGGATGCAGAGTTCGTGGTGTCCTGTGCGTACGAGCCGGGCACGGAATGG
GGCGAGGAGGTCGGCTTCTTGTACCAGTCGGTGGTGGAGGACTACTTCACCGGCTACCGG
CAGCTCTACTGCCGAGGATGGACGTCCGTCTACTGCTTCCCGGCGACGGCGTCGAGGCCG
CCGTTCCTCGGCAGCGTGCCCACCAACCTCAACGACGCGCTGGTGCAGAACAAGCGGTGG
ATGTCCGGCATGCTCGCCGTCGGCCTCTCCAGGCACTGCCCCTTCGCCTCCGCCGCCGTC
TCCGTGCCTCAGAGCATGGGCTTCGCCTACTACGCCTTCATGGCCCTGTACGCCTTCCCC
GTGCTCTGCTACGCCACCGTGCCGCAGCTCTGTTTCTTCCGTGGCGGCACGTCGTTTCCC
GGGGCGTCGACGCCCTGGTTCGGCGCCGTGTTCGTGTCGTCGTCGCTGCAGCACCTGGTG
GAGGTGTCGGTGGCGAAGCGCGGGCTGGCGGCGAGGACGTGGTGGGACGAGCAGAGGTTT
TGGGCGCTCAACGCCGTCACGGGCCAGCTCTTCGCCTGCCTCCGCGTTGCCCTCAGCCTG
GCCGGCGCCGGCAGCCGGGCGGTGGACTTCGACCTCACCAGCAAGGCGTCCGACGACAGG
CTGTACCGGGACGGCGTGTTCGACTTCGCCGGATGCTCGGCGCTGCTCCTGCCGGCCACC
ACGCTCTGCCTGCTCAACGCCGCAGCGCTCCTCGGCGGGGTGTGGAAGATGGTCGGCGGG
GGCGGCAGCGTGTCCGGCGAGCTGTTCCTCCTCTGCTACGTCGTGGCACTGAGCTATCCG
CTGCTGCAGGGGATGTTCCTCAGGCGGGATGCTGCAAGAGTTCCAGCGCGGATCACGGCA
ATATCCGTCGCCATGGTTGCCGCTCTGCTTTGCTTGTTTGGTTAAGCCGACCACTTAAGT
GAGACCTAACAGCATGTTTGAAACTACTCTACTTCATAAAATTAGTCATACTTCATTGTC
GGTGAATACTCACAACATATGTCATAGGTAGGCTAAAGTCGGTGAAAACCGAAGGAATAA
ATGTGGGTGCTGGGAACGAGGTTCGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_9483 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None