barSeed - Barley Seed Development Database

Probe CUST_34140_PI390587928

Source Contig U35_14501

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34140_PI390587928	Hv_44K_v2	TTGTTGCCAAGTAGTTGTTGTCCTACTACAGTAGTACCCTAGCAGTATGTTTCCGTGGTC	320	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.011	0.082	0.602	1.551	1.501	2.688
Raw	216.199	4379.041	26695.233	107706.200	34999.733	69212.133

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55460.1	1007	2e-24	218 - 277	100	60 / 60	minus	ABC01073 ABC01075 ABC44030 ABC44289
JLOC1	JLOC1_35779.1	612	8e-25	415 - 474	100	60 / 60	plus
JLOC1	JLOC1_35780.1	1004	8e-25	218 - 277	100	60 / 60	minus
Harvest21	ABC44030	507	3e-25	102 - 161	100	60 / 60	minus	ABC44030
Harvest21	ABC01073	497	3e-25	336 - 395	100	60 / 60	plus	ABC01073
Harvest21	ABC44289	512	1e-23	117 - 177	98	60 / 61	minus	ABC44289
Harvest21	ABC01075	911	1e-23	716 - 775	98	59 / 60	plus	ABC01075
Harvest35	U35_14501	483	3e-25	321 - 380	100	60 / 60	plus
Harvest35	U35_14502	910	1e-23	716 - 775	98	59 / 60	plus

Contig Sequence (483 bp)

>U35_14501 483 Hv_44K_v2
GCGGCTGAACACCACAGAGACAGGGGCGTCCTAGGCGGCGGCGGCGCCTTCGCCGACCGC
AGTGGCCAGGGCGGCTACGGCGGCGACCACCACGACCAGCAGAAGCAGCCCGCGATGATG
TGCGCAGACCCGCATCGACCAGGCGCAGGGGGCTTGAAGAGAGAGGTTCGTGCTCCGACG
CGCGGCCGATGCGTCGATGGTGAACGGTGTAGCGCACGGTTGCGCGCGTTCAATCGCCGC
CGTGCCCGCCGCGCGAGCAAGTCGACGACGACGACGTTTACCGCCTGTTGTGTTATCCGA
CCGAGTGCGTGTTTAGACTTTTGTTGCCAAGTAGTTGTTGTCCTACTACAGTAGTACCCT
AGCAGTATGTTTCCGTGGTCGGAAGTCGGGAGAGGTTCTGCATGTTGGATGTATGCTGTC
TGAGTTTGTGGTGAATAAATTGCCTGAGTCCGGGCGGAGTGTGTATAAAAAAAAAAAAAA
AAA

Homology of Contig U35_14501 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None