barSeed - Barley Seed Development Database

Probe CUST_3413_PI390587928

Source Contig U35_23837

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3413_PI390587928	Hv_44K_v2	AAACTAAGAAGATTTGAAGAGGCAGAGAGTGATTGCACTGAGGCTCTGAATCTGGATGAC	561	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364468	1689	2e-24	554 - 613	100	60 / 60	plus	ABC11032
MLOC	MLOC_17168.1	673	9e-22	619 - 673	100	55 / 55	plus	ABC11032
JLOC1	JLOC1_11856.3	2185	8e-25	564 - 623	100	60 / 60	plus
JLOC1	JLOC1_11856.2	2054	8e-25	613 - 672	100	60 / 60	plus
JLOC1	JLOC1_11856.1	2009	8e-25	613 - 672	100	60 / 60	plus
Harvest21	ABC11032	1661	3e-25	540 - 599	100	60 / 60	plus	ABC11032
Harvest35	U35_23837	621	3e-25	562 - 621	100	60 / 60	plus

Contig Sequence (621 bp)

>U35_23837 621 Hv_44K_v2
GAGCTCGACCAAGCCAGCCAAAATCCTGCCCGCTTCCTCTTCCAAGAAACGTTAGCGCCG
CCGCCGCCTCCCTCGACGCCGGCCTCCAATCCAATCACCCCTCCCTCTAACCCAGCAGAG
GAGAGGGTTCTCTGCCTGACCTCGCGCTTCGTTCGGTAGAGAGACAGGGCGCCGCTGCGC
TGCCCCCGCCCACCGCCTCGTCCGCGTCTTACGCTGCGCCTCCGACCCGTCCCCCGCCTC
CGCTGGACTGCTGCGCCGCTGCGTCAGGCCGGAACCCCGCCCCTGTCGGCTCTCCCCCGC
TGCACCTCCTGCTCGTCGAGCTCGCCCACGCGTTCCACTCTCGCCGCGCCGCTGCTCCAA
GAGATGGCGGCTCGGTACAATCGCACAAACTACTCTTCCTACCTGAATGAAGAACCAATG
CCTGACGCCACGTCGGAAAAGGAACAGGGTAATGAGTATTTCAAACAGAAGAAGTTTGCT
GAAGCAATCGAGTGCTACTCTAGAAGTGTTGCAATGTCGCCGACAGCTGTTGCCTTTGCC
AACCGAGCTATGGCATATCTTAAACTAAGAAGATTTGAAGAGGCAGAGAGTGATTGCACT
GAGGCTCTGAATCTGGATGAC

Homology of Contig U35_23837 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None