- Probe CUST_34139_PI390587928
- Source Contig U35_14502
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34139_PI390587928 | Hv_44K_v2 | AAGTAGTTGTTGTCCTACTACAGTAGTACCATAGCAGTATGTTTCCGTGGTCGGAAGTCG | 723 | GeneList: midnightblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.011 | 0.086 | 0.626 | 1.482 | 1.547 | 2.652 |
| Raw | 195.691 | 3863.319 | 23553.233 | 86788.500 | 30543.500 | 58070.867 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_55460.1 | 1007 | 7e-23 | 210 - 269 | 98 | 59 / 60 | minus | ABC01073 ABC01075 ABC44030 ABC44289 |
| JLOC1 | JLOC1_35779.1 | 612 | 4e-23 | 423 - 482 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_35780.1 | 1004 | 4e-23 | 210 - 269 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC01075 | 911 | 3e-25 | 724 - 783 | 100 | 60 / 60 | plus | ABC01075 |
| Harvest21 | ABC44030 | 507 | 1e-23 | 94 - 153 | 98 | 59 / 60 | minus | ABC44030 |
| Harvest21 | ABC01073 | 497 | 1e-23 | 344 - 403 | 98 | 59 / 60 | plus | ABC01073 |
| Harvest21 | ABC44289 | 512 | 6e-22 | 109 - 169 | 97 | 59 / 61 | minus | ABC44289 |
| Harvest35 | U35_14502 | 910 | 3e-25 | 724 - 783 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14501 | 483 | 1e-23 | 329 - 388 | 98 | 59 / 60 | plus |
Contig Sequence (910 bp)
>U35_14502 910 Hv_44K_v2 CGCTTCCTTCACTCGCAGCGACCGTGCTCTGGTAGTGCCCATCTCTCCTCCACACGTACC ACCTTCCTTCACATGGCGGCTGAACACCACAGAGACAGGGGCGTCCTAGGCGGCGGCGGC GCCTTCGCCGACCGCAGTGGCCAGGGCGGCTACGGCGGCGACCACCACGACCAGCAGAAG CAGCCCGCGATGATGTGCGCCCTGAAGGCCGCGACGGCGGCCACGGCCGCCGGGTCGTTG CTTGTGCTGTCCGGGCTGATCCTGGCCGGCACCGTCATCGCGCTCACCGTGGCGACGCCC GTGCTGGTCATCTTCAGCCCGGTGCTGGTGCCGGCGGCCATCGCCCTGGCGCTCATGTCC GCCGGCTTCGTCACGTCCGGCGGGCTGGGCGTGGCTGCGCTGTCCGTGTTCTCGTGGATG TACAAGTACCTCACCGGCAAGCACCCGCCGGGCGCCGACCAGCTGGACCACGCCAAGGCG CGGCTCGCGTCCAAGGCCCGCGACATCAAGGACGCCGCGCAGACCCGCATCGACCAGGCG CAGGGGGCTTGAAGAGAGAGGTTCGTGCTCCGACGCGCGGCCGATGCGTCGATGGTGAAC GGTGTAGCGCACGGTTGCGCGCGTTCAATCGCCGCCGTGCCCGCCGCGCGAGCAAGTCGA CGACGACGACGTTTACCGCCTGTTGTGTTATCCGACCGAGTGCGTGTTTAGACTTTTGTT GCCAAGTAGTTGTTGTCCTACTACAGTAGTACCATAGCAGTATGTTTCCGTGGTCGGAAG TCGGGAGAGGTTCTGCATGTTGGATGTATGCTGTCTGAGTTTGTGGTGAATAAATTGCCT GAGTCCGGGTGGAGTGTGTAAAAAAAAAAAAAAAAAATGCAACTTGCAGAAGAAAAAAAA AAAAAAAAAA
Homology of Contig U35_14502 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |