barSeed - Barley Seed Development Database

Probe CUST_34138_PI390587928

Source Contig U35_14503

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34138_PI390587928	Hv_44K_v2	GACCTAAAGCTATCGAGATTCTATTATGTGTTCCGTCCTAAAGTATTTTCATCTGTTCAG	771	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251391.1	1440	2e-24	1347 - 1406	100	60 / 60	plus	ABC01024 ABC04901 ABC04902
MLOC	AK358692	992	2e-24	894 - 953	100	60 / 60	plus	ABC01024 ABC49887
JLOC1	JLOC1_41719.1	1340	8e-25	1024 - 1083	100	60 / 60	plus
Harvest21	ABC49887	168	3e-25	88 - 147	100	60 / 60	minus	ABC49887
Harvest21	ABC28906	113	3e-25	35 - 94	100	60 / 60	plus	ABC28906
Harvest21	ABC01024	1138	2e-22	1053 - 1114	97	60 / 62	plus	ABC01024
Harvest35	U35_14503	850	3e-25	772 - 831	100	60 / 60	plus
Harvest35	U35_14504	1033	1e-24	892 - 950	100	59 / 59	plus

Contig Sequence (850 bp)

>U35_14503 850 Hv_44K_v2
GCATAGGAGGCGAAGCAGCAGCGGAGCCAAGCAACCGACGCCACCATGGGTATCTCGCGT
GACTCCATGCACAAGCGCCGGGCCACCGGTGGGAAGCAGAAGGCATGGAGGAAGAAGCGA
AAGTATGAGCTTGGCCGCCAGCCTGCCAACACTAAGCTTTCGAGCAACAAGACAGTGAGG
AGGGTCCGTGTTCGTGGAGGTAATGTGAAATGGAGGGCTCTCCGTCTGGACACTGGTAAC
TTCTCATGGGGTAGTGAGGCCACAACCCGCAAGACCCGTCTCCTGGATGTGGTTTACAAT
TCGTCAAACAATGAGCTTGTGAGGACTCAGACCCTTGTGAAGAATGCCATTGTGCAAGTT
GATGCTGCCCCTTTCAAGCAGTGGTACCTGACTCATTATGGAGTGGAAATCGGTAGGAAG
AAGAAAGCTGCTGCCGCTGCCAAAAAGGATGCTGCTGAGGGGCAAGAGGCTGAGGTTGCT
GCTGCTGCCACAGAGGAAGCAAAGAAGAGCAACAAAGTCCAGAGGAAGCTTGAGAAGCGT
CAGCAGGGGCGCACTCTGGACTCACACATCAAGGAGCTGGAGTTCTACATGAGGAAGCTC
CAGAAGAAGAAGGGCAAGGGTGCCACAGCATAGGCGCTGAAGAGCTGCATGTTACTCGTT
GGGTTTTCTTAGTTGTTGCGTCAATGTCTGTTTACAGACATACTGAACACCATTTTCTGT
AAACGGTTCCGGTCTAGGTTGAACTGAGAATGTTTTGCCTGCTTTGGTTGTGACCTAAAG
CTATCGAGATTCTATTATGTGTTCCGTCCTAAAGTATTTTCATCTGTTCAGTGAAAAAAA
AAAAAAAAAA

Homology of Contig U35_14503 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g28180.1	222	3e-79	protein\|ribosomal protein, putative, expressed
Brachypodium v1_2	Bradi3g43560.2	227	1e-82
Arabidopsis v10	AT5G59240.1	210	2e-75	Ribosomal protein S8e family protein \| chr5:23902626-23903670 REVERSE LENGTH=210