barSeed - Barley Seed Development Database

Probe CUST_34137_PI390587928

Source Contig U35_14504

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34137_PI390587928	Hv_44K_v2	TGTTCATTTGCTGCCGATTTTACTGTTTGATTTGTGTCCCTTAATCCTGTAAGCAAGGAA	970	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.215	1.068	1.070	0.985	0.325	0.327
Raw	4376.633	6080.193	5264.473	7663.777	887.811	970.019

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_41719.1	1340	4e-23	1108 - 1167	98	59 / 60	plus
Harvest21	ABC49887	168	1e-23	4 - 63	98	59 / 60	minus	ABC49887
Harvest35	U35_14504	1033	3e-25	971 - 1030	100	60 / 60	plus

Contig Sequence (1033 bp)

>U35_14504 1033 Hv_44K_v2
CGAGGCCAAACCAAAGCTGCGGCGGCGCGGGCATAGGAGGCGAAGCAGCAGCGGAGCCAA
GCAACCGACGCCACCATGGGTATCTCGCGTGACTCCATGCACAAGCGCCGGGCCACCGGT
GGGAAGCAGAAGGCATGGAGGAAGAAGCGAAAGTATGAGCTTGGCCGCCAGCCTGCCAAC
ACTAAGCTTTCGAGCAACAAGACAGTGAGGAGGGTCCGTGTTCGTGGAGGTAATGTGAAA
TGGAGGGCTCTCCGTCTGGACACTGGTAACTTCTCATGGGGTAGTGAGGCCACAACCCGC
AAGACCCGTCTCCTGGATGTGGTTTACAATTCGTCAAACAATGAGCTTGTGAGGACTCAG
ACCCTTGTGAAGAATGCCATTGTGCAAGTTGATGCTGCCCCTTTCAAGCAGTGGTACCTG
ACTCATTATGGAGTGGAAATCGGTAGGAAGAAGAAAGCTGCTGCCGCTGCCAAAAAGGAT
GCTGCTGAGGGGCAAGAGGCTGAGGTTGCTGCTGCTGCCACAGAGGAAGCAAAGAAGAGC
AACAAAGTCCAGAGGAAGCTTGAGAAGCGTCAGCAGGGGCGCACTCTGGACTCACACATT
GAGGAGCAGTTCAGCGGTGGAAGGTTGCTGGCTTGCATTTCGTCTCGCCCTGGGCAGTGT
GGGAGAGCTGATGGGTACATCCTTGAGGGCAAGGAGCTGGAGTTCTACATGAGGAAGCTC
CAGAAGAAGAAGGGCAAGGGTGCCACAGCATAGGCGCTGAAGAGCTGCATGTTACTCGTT
GGGTTTTCTTAGTTGTTGCGTCAATGTCTGTTTACAGACATACTGAACACCATTTTCTGT
AAACGGTTCCGGTCTAGGTTGAACTGAGAATGTTTTGCCTGCTTTGGTTGTGACCTAAAG
CTATCGAGATTCTATTATGTGTTCCGTCCTAAAGTATTTTCATCTGTTCAAAGAAAAAAA
AAAAAAAAAATGTTCATTTGCTGCCGATTTTACTGTTTGATTTGTGTCCCTTAATCCTGT
AAGCAAGGAAATT

Homology of Contig U35_14504 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g28180.1	222	6e-106	protein\|ribosomal protein, putative, expressed
Brachypodium v1_2	Bradi3g43560.2	227	7e-110
Arabidopsis v10	AT5G59240.1	210	3e-102	Ribosomal protein S8e family protein \| chr5:23902626-23903670 REVERSE LENGTH=210