barSeed - Barley Seed Development Database

Probe CUST_34126_PI390587928

Source Contig U35_14516

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34126_PI390587928	Hv_44K_v2	GCATGACAGTTGCTTTCCCACCACGCTTGCTACCTAAACCAGCGAGACGTCACGGGGTTT	731	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.032	0.169	0.689	1.764	1.642	2.911
Raw	26.559	229.438	802.957	3339.713	1043.975	2002.383

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63625.1	2141	2e-24	1998 - 2057	100	60 / 60	plus	ABC02289 ABC11766
JLOC1	JLOC1_41690.1	2122	8e-25	1931 - 1990	100	60 / 60	plus
Harvest21	ABC02288	791	3e-25	732 - 791	100	60 / 60	plus
Harvest35	U35_14516	791	3e-25	732 - 791	100	60 / 60	plus

Contig Sequence (791 bp)

>U35_14516 791 Hv_44K_v2
GCCAACAAGCCCTACATGGTTGCAAGCGGCAACCACGAGAGAGACTGGCCCAACACCGGC
GGATTCTTCGACGTCAAGGACTCCGGCGGCGAGTGCGGCGTGCCGGCCGAGACCATGTAC
TACTACCCGGCCGAAAACAGAGCAAATTTCTGGTACAAGGTGGACTACGGGATGTTCCGG
TTCTGCGTGGCGGACTCGGAGCACGACTGGCGGGAGGGGACGCCGCAGCACAGGTTCATC
GAGGAGTGCCTCTCCACTGTGGACCGGAAGCACCAGCCGTGGCTCATCTTCGCGGCGCAC
CGGGTGCTGGGCTACTCCTCCAACTCGTGGTACGCCGACCAGGGCTCCTTCGAGGAGCCC
GAGGGCCGGGAGAGCCTGCAGAAGCTGTGGCAGCGGCACCGCGTCGACATTGCCTTCTTC
GGCCACGTCCACAACTACGAGCGCACCTGCCCGCTCTACCAGGGCCAGTGCGTCACCGGC
GAGCGGAGCAGCTACTCGGGCACCATGAACGGGACCATCTTTGTCGTGGCCGGCGGCGGC
GGCAGCCACCTCTCGGGCTACACCAGCGCGATCCCCAAGTGGAGCGTGGTCAGGGATAAG
GACTACGGGTTCACCAAGCTCACCGCCTTCAACCACTCGTCGCTCTTGTTCGAGTACAAG
AAGAGCAGCGACGGCAAGGTCTATGATTCCTTCACAGTCCATAGGGACTACCGCGACGTG
CTCGGCTGCGTGCATGACAGTTGCTTTCCCACCACGCTTGCTACCTAAACCAGCGAGACG
TCACGGGGTTT

Homology of Contig U35_14516 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g41880.1	624	3e-179	protein\|nucleotide pyrophosphatase/phosphodiesterase, putative, expressed
Brachypodium v1_2	Bradi3g41200.1	621	2e-177
Arabidopsis v10	AT4G24890.1	615	6e-146	\| Symbols: ATPAP24, PAP24 \| purple acid phosphatase 24 \| chr4:12811510-12814440 REVERSE LENGTH=615