barSeed - Barley Seed Development Database

Probe CUST_34122_PI390587928

Source Contig U35_14520

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34122_PI390587928	Hv_44K_v2	TATCTCTGTACGTAGTGCGGAATAAAACGATCGAGAGCCATTCTGTTGTGTTGTAAAAAA	1660	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357890	2316	3e-21	2250 - 2303	100	54 / 54	plus	ABC02949 ABC03533
MLOC	MLOC_14696.6	1474	3e-21	1311 - 1364	100	54 / 54	plus	ABC03533
MLOC	MLOC_14696.2	2907	3e-21	2093 - 2146	100	54 / 54	plus	ABC03533
JLOC1	JLOC1_10037.1	2039	2e-21	1779 - 1832	100	54 / 54	plus
Harvest35	U35_14520	1819	3e-25	1661 - 1720	100	60 / 60	plus

Contig Sequence (1819 bp)

>U35_14520 1819 Hv_44K_v2
ACCAACCACACCCTCTCTAGATCTGGAAGAACAACATGCCGGCGGCAGCTGTGGTAGAAG
AAGTAGAACTTCCCAGCTGCATCGCTCTGCGGTCGCAGAGCAATGGCTGCTACCTGCGCT
ATGTGCACGAGCACGGCGAGACCTACAGGCAGCTGCAGCTCAACGGTAAGGACACCATTA
ACCCCTACACCAGGTACGACGTCCAAGTGTCCCGGAAGCACAACGGCCTCGTGCACATCC
GATGCCGCTACAACCGTAAGTACTGGGTGGCTCGTCGGCGGGGCGACGCCTGGTGTATCG
CCGCCGACGCAGACGAGCCGGAAGAAGACCTGACCAACCCCAACTGTACCTTGATTAAGC
CCATCGTCACAGTCACAGCCGCCGCCGCCGCTGAGGACGGCCATGAATCGGTGATGACCG
TTCGGTTCGTCGGCGCCGGCGATGGCAAGGCTGGAAAGGCGACGCGGCGCATGACCTTCG
CCAAGGATGACGCTGCTCCATGCATGCGTGTCGTCGAAGCCACCGCCGGCGATCTTGACC
ATGACGACGTCGACGACGCGTTCACCGTCCTCAACCTGGTGAACAGCGCCAGGATGCTCC
CCAAGTTTGTCATGTTCAAGGGCAACAACGACTTGTTCCTGGCCTCCCGTCACATAAACA
ACCGGAACGTCCTCGAGTTCGCGGTGACGGACATCGGCGACGGCAGCGCGAGGTTCGAGC
TCTTCCCCAGGAACGACGGCTCCTTCTGCATCGCCACCCACAACCCCGGCCAAGGAACGT
GGTCGTCCTACTGGAACCTCGCGTCCGGGAACTGGATCGAGCCAAACATATTACAGAATA
ACGCAGCCAGCAACAGGAGCGCGTGGTTCCAGATACACCAGGTGAACGACTCGTTCGCCA
TCCGCAGCGTGAGCAGCGGCCGCTTCTGCAAGAGGTTCACGGGGTCGGGCTTCACCAGCT
GCCTTAACGCGGCCGACACGACCATCACGGCGGAGGCACGCGTCGTCGTGGAGGAGCCCA
TCCTGCACCGGGAGATCCACAGCATCAGCTACAGGCTCGACGAGGCGAGGGTGTATGACA
CCACCGTGCTCACCATGGCCACCACGGCGGCCGTCAACGACACCTCCGCCGAGAACACCA
AGAGGCTCAGGCTGGTGTACGAGGAGGAGGAGATGAGCACCTGGGACGCCACACTCGAGC
TCAAGCTCGGCTACAATTCCACCATTAGGGCAGGGTTCCCCAAGCTCGGCCTCGGCGCGC
AGATCAGCATCTCGGCCGAGTTCTACGGTGAGTACAACTGGGGCCAGACCATGGAGAAGA
AGGTGAGGCACGAGGTCGAGTACGAGGCCGCAGTGCCGCCCAGGACCAAGGTCACCGTCA
TGGCCATCGCGACCAGGAGCACCGTCGACGTCCCCTTCACCTACTGGCAGCGGGACGTCA
CCATAGACGGGAAGGTGGAGGAGACACTCATGAGGGATGGACTCTACACCGGCATCAACA
GCTACAACTTCAACTTCGACACTGTCGAGGAGAAGCTGCCGGAGAGGATCCCCCTCACTT
GATCAATTCGCTTTATCTTAATTATCATCAATAAGTTTCGGTTCATCTTATCAACCGATG
GAGAGGAAACAACGTAGTATCTTGCATGCGTTCGCGCATATATCTCTGTACGTAGTGCGG
AATAAAACGATCGAGAGCCATTCTGTTGTGTTGTAAAAAAAAAAAAAAAAATACCTTCTG
CACCAAAGCAATTACTAACCATCGCGCGGGTGGTCCTGATCCATGTCTACCTACCTTCTT
TAGCAAAGCAATTACTTAC

Homology of Contig U35_14520 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g13580.1	488	5e-94
Arabidopsis v10	None