barSeed - Barley Seed Development Database

Probe CUST_34120_PI390587928

Source Contig U35_14522

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34120_PI390587928	Hv_44K_v2	AATCATGGGATTTGCTTTGTAATGGTAATCGTGAAATTTGTGTGGTTGTGTTTTGGTCAA	736	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77840.1	992	2e-24	769 - 828	100	60 / 60	plus	ABC00097
JLOC1	JLOC1_51890.1	1059	8e-25	795 - 854	100	60 / 60	plus
Harvest21	ABC00862	898	3e-25	718 - 777	100	60 / 60	plus
Harvest21	ABC00097	561	3e-25	69 - 128	100	60 / 60	minus	ABC00097
Harvest35	U35_14522	903	3e-25	737 - 796	100	60 / 60	plus

Contig Sequence (903 bp)

>U35_14522 903 Hv_44K_v2
TCGAGCACTGTTGGCCTCTCTCGCCGTCCGCCGCTACTCCCCTGCTCGCCTCCGCTCTTT
AGGGTTTTCTCTTTTTTCGGGGGAGAAATCTCAAGAGGCGGCATCATGCTCGTGTACCAG
GACAAGCTTTCCGGCGATGAACTCCTGTCGGATTCCTTCCCGTACAGGGAGCTGGAGAAC
GGTGTGCTCTGGGAAGTCGATGGCCATTGGGTCGTTCAAGGAGCAGTTGATGTGGACATT
GGTGCCAACCCCTCTGCTGAGGGTGGTGGTGAGGATGAGGGTGTCGATGACCAGGCCGTG
AAGGTGGTTGACATTGTTGACACCTTCCGTCTTCAGGAGCAACCTGCTTTTGACAAGAAG
CAGTTTATTGCTTACATCAAGCGCTACATCAAGAACCTCACTGCCAAGCTTGAAGGTGAG
GAGCTAGATGCTTTCAAGAAGAACGTTGAGTCTGCCACGAAGTATCTTCTTAGCAAGCTC
AAGGACCTTCAGTTCTTTGTGGGCGAGAGCATGCATGATGATGGCAGCGTGGTGTTTGCC
TACTACAGGGAGGGAGCTGCTGATCCAACTTTCCTCTATTTCGCTCATGGGCTGAAAGAG
GTCAAGTGCTAATCGCACTGTATGCTAATATCTATGTGGTCGTCAGTATTTTTGCTCTGC
TCTATGGTTGTCAGTCGACTCTCCAATGCTTGTGTCAGTAACTATCAGATGTTGAGTATC
TTGAAAACTTTGTGATAATCATGGGATTTGCTTTGTAATGGTAATCGTGAAATTTGTGTG
GTTGTGTTTTGGTCAAAAAAAAAAAAAAAAATCACTCGCTAGTTGAATCAAAGAGATTTT
GCTGTGGAAAAAAAAAAAAAAAAATTTATAATCTTATGTCTTTGTAAAAAAAAAAAAAAA
AAA

Homology of Contig U35_14522 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g43900.1	169	5e-92	protein\|translationally-controlled tumor protein, putative, expressed
Brachypodium v1_2	Bradi4g10920.1	169	3e-97
Arabidopsis v10	AT3G16640.1	168	4e-79	\| Symbols: TCTP \| translationally controlled tumor protein \| chr3:5669709-5670729 REVERSE LENGTH=168